Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16980

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
3,674,256	+		RR42_RS16975	0.27	+0.7
3,674,256	+		RR42_RS16975	0.27	-1.6
3,674,256	+		RR42_RS16975	0.27	+1.0
3,674,257	-		RR42_RS16975	0.27	+1.5
3,674,257	-		RR42_RS16975	0.27	+0.9
3,674,257	-		RR42_RS16975	0.27	+0.9
3,674,257	-		RR42_RS16975	0.27	+0.7
3,674,257	-		RR42_RS16975	0.27	+2.0
3,674,257	-		RR42_RS16975	0.27	+0.7
3,674,257	-		RR42_RS16975	0.27	+0.5
3,674,274	+		RR42_RS16975	0.29	+0.9
3,674,274	+		RR42_RS16975	0.29	-0.2
3,674,274	+		RR42_RS16975	0.29	+0.6
3,674,683	-		RR42_RS16975	0.73	+1.0
3,674,683	-		RR42_RS16975	0.73	+0.5
3,674,778	-		RR42_RS16975	0.83	+0.7
3,674,778	-		RR42_RS16975	0.83	+2.0
3,674,778	-		RR42_RS16975	0.83	+0.1
3,674,778	-		RR42_RS16975	0.83	-0.6
3,674,778	-		RR42_RS16975	0.83	+0.4
3,674,853	+				-1.4
3,674,854	-				-0.0
3,674,865	+				-1.9
3,674,865	+				+0.2
3,674,886	+				+0.6
3,674,886	+				-0.2
3,674,886	+				+0.7
3,674,886	+				+0.6
3,674,886	+				+0.6
3,674,886	+				+0.5
3,674,886	+				+0.6
3,674,887	-				+1.0
3,674,887	-				+0.4
3,674,887	-				+0.5
3,674,887	-				+1.1
3,674,887	-				+2.4
3,674,887	-				-0.0
3,674,932	+				+0.5
3,674,932	+				-0.9
3,675,000	+				-0.4
3,675,000	+				+0.4
3,675,000	+				+1.1
3,675,000	+				-0.0
3,675,000	+				+0.5
3,675,000	+				-0.2
3,675,001	-				+1.1
3,675,001	-				+0.0
3,675,001	-				+0.2
3,675,001	-				-0.3
3,675,001	-				+1.0
3,675,017	-				+0.0
3,675,017	-				+0.7
3,675,026	-				+0.4
3,675,026	-				+0.9
3,675,049	-				-0.3
3,675,049	-				-1.2
3,675,049	-				+0.7
3,675,049	-				-0.8
3,675,063	-				-1.2
3,675,077	+				+1.0
3,675,078	-				+0.6
3,675,078	-				+0.5
3,675,137	+				-1.5
3,675,148	+				+1.5
3,675,148	+				-0.2
3,675,148	+				+0.7
3,675,148	+				+0.3
3,675,190	+				+0.4
3,675,190	+				-0.0
3,675,190	+				+1.5
3,675,190	+				-0.1
3,675,190	+				+1.0
3,675,190	+				-0.1
3,675,191	-				+0.3
3,675,196	+				+0.0
3,675,196	+				+1.3
3,675,197	-				+0.1
3,675,197	-				+1.1
3,675,197	-				+0.7
3,675,197	-				+1.2
3,675,197	-				+0.6
3,675,265	+				-0.6
3,675,265	+				+0.5
3,675,266	-				+0.6
3,675,266	-				+1.3
3,675,266	-				+1.6
3,675,266	-				+1.1
3,675,266	-				+0.6
3,675,266	-				+0.7
3,675,355	+		RR42_RS16980	0.17	+0.2
3,675,355	+		RR42_RS16980	0.17	-0.7
3,675,355	+		RR42_RS16980	0.17	-0.3
3,675,355	+		RR42_RS16980	0.17	+1.0
3,675,356	-		RR42_RS16980	0.17	+0.4
3,675,356	-		RR42_RS16980	0.17	+1.4
3,675,356	-		RR42_RS16980	0.17	+1.5
3,675,370	+		RR42_RS16980	0.18	-1.8
3,675,370	+		RR42_RS16980	0.18	+0.2
3,675,370	+		RR42_RS16980	0.18	+0.4
3,675,371	-		RR42_RS16980	0.19	+0.6
3,675,371	-		RR42_RS16980	0.19	+2.0
3,675,371	-		RR42_RS16980	0.19	+0.7
3,675,371	-		RR42_RS16980	0.19	+0.2
3,675,604	+		RR42_RS16980	0.38	+0.6
3,675,605	-		RR42_RS16980	0.38	+0.8
3,675,605	-		RR42_RS16980	0.38	+1.0
3,675,605	-		RR42_RS16980	0.38	+0.3
3,675,605	-		RR42_RS16980	0.38	+0.5
3,675,605	-		RR42_RS16980	0.38	+1.0
3,675,605	-		RR42_RS16980	0.38	-0.1
3,675,605	-		RR42_RS16980	0.38	+0.9
3,675,605	-		RR42_RS16980	0.38	+0.4
3,675,605	-		RR42_RS16980	0.38	+0.4
3,675,605	-		RR42_RS16980	0.38	+0.9
3,675,605	-		RR42_RS16980	0.38	-0.1
3,675,808	+		RR42_RS16980	0.55	+0.4
3,675,808	+		RR42_RS16980	0.55	+0.8
3,675,808	+		RR42_RS16980	0.55	-1.0
3,675,808	+		RR42_RS16980	0.55	-0.2
3,675,809	-		RR42_RS16980	0.55	+0.9
3,675,809	-		RR42_RS16980	0.55	+0.7
3,675,809	-		RR42_RS16980	0.55	+0.1
3,675,809	-		RR42_RS16980	0.55	-0.2
3,675,809	-		RR42_RS16980	0.55	+0.9
3,675,809	-		RR42_RS16980	0.55	+1.2
3,675,809	-		RR42_RS16980	0.55	+0.9
3,675,809	-		RR42_RS16980	0.55	+1.8
3,675,809	-		RR42_RS16980	0.55	+0.1
3,675,812	+		RR42_RS16980	0.55	-0.1
3,675,883	+		RR42_RS16980	0.61	-0.3
3,675,884	-		RR42_RS16980	0.61	-0.1
3,675,932	+		RR42_RS16980	0.65	-0.8
3,675,934	+		RR42_RS16980	0.65	+0.1
3,675,934	+		RR42_RS16980	0.65	-2.7
3,675,934	+		RR42_RS16980	0.65	-1.1
3,675,934	+		RR42_RS16980	0.65	-0.3
3,675,934	+		RR42_RS16980	0.65	+0.6
3,675,934	+		RR42_RS16980	0.65	-0.1
3,675,934	+		RR42_RS16980	0.65	-2.8
3,675,934	+		RR42_RS16980	0.65	+1.1
3,675,935	-		RR42_RS16980	0.65	+0.4
3,675,935	-		RR42_RS16980	0.65	+0.2
3,675,935	-		RR42_RS16980	0.65	+0.4
3,675,935	-		RR42_RS16980	0.65	+1.4
3,675,935	-		RR42_RS16980	0.65	-2.6
3,675,935	-		RR42_RS16980	0.65	+0.3
3,676,204	-		RR42_RS16980	0.88	+0.2
3,676,204	-		RR42_RS16980	0.88	+0.8
3,676,298	+				-0.2
3,676,364	+				-0.5
3,676,422	-				-0.0
3,676,422	-				+0.2
3,676,465	-				+0.6
3,676,572	-				+0.8
3,676,581	+				-0.8
3,676,581	+				+0.1
3,676,582	-				+0.2
3,676,582	-				+0.2
3,676,585	-				+0.6
3,676,632	+				+0.3
3,676,632	+				+0.5
3,676,633	-				+1.1
3,676,654	-				+1.2
3,676,660	+				-0.4
3,676,661	-				+0.7
3,676,696	+				+1.8
3,676,697	-				-0.4
3,676,697	-				+0.2
3,676,697	-				+1.1
3,676,725	+				+0.6
3,676,832	-				+0.0
3,676,832	-				+0.3
3,676,843	+				+0.2
3,676,843	+				-0.0
3,676,844	-				-0.1
3,676,845	+				+1.1
3,676,845	+				-0.3
3,676,845	+				+1.4