Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11160

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,383,684	+		RR42_RS11155	0.66	+1.4
2,383,684	+		RR42_RS11155	0.66	+0.7
2,383,685	-		RR42_RS11155	0.66	+0.6
2,383,729	+		RR42_RS11155	0.69	+0.1
2,383,729	+		RR42_RS11155	0.69	-0.1
2,383,729	+		RR42_RS11155	0.69	+0.3
2,383,730	-		RR42_RS11155	0.69	+1.1
2,383,894	+		RR42_RS11155	0.79	-0.8
2,383,894	+		RR42_RS11155	0.79	-0.3
2,383,895	-		RR42_RS11155	0.79	-0.9
2,383,895	-		RR42_RS11155	0.79	+0.1
2,383,895	-		RR42_RS11155	0.79	+0.1
2,383,966	-		RR42_RS11155	0.83	-0.7
2,383,990	+		RR42_RS11155	0.85	+1.2
2,383,993	+		RR42_RS11155	0.85	-0.3
2,383,993	+		RR42_RS11155	0.85	-2.5
2,383,993	+		RR42_RS11155	0.85	+0.6
2,383,993	+		RR42_RS11155	0.85	+0.9
2,383,994	-		RR42_RS11155	0.85	+0.3
2,383,994	-		RR42_RS11155	0.85	+0.0
2,384,114	+				-1.1
2,384,114	+				-0.3
2,384,114	+				-0.1
2,384,114	+				-1.2
2,384,114	+				+2.0
2,384,115	-				-0.0
2,384,117	-				-0.8
2,384,168	-				-0.0
2,384,245	+				-0.2
2,384,246	-				-1.2
2,384,482	-				+0.3
2,384,482	-				+0.3
2,384,486	+				+0.4
2,384,486	+				+0.0
2,384,487	-				-0.1
2,384,586	+				-0.4
2,384,587	-				-0.7
2,384,733	+				-0.8
2,384,733	+				-0.7
2,384,835	+		RR42_RS11160	0.11	-0.0
2,384,836	-		RR42_RS11160	0.11	-0.4
2,385,025	+		RR42_RS11160	0.24	+0.0
2,385,026	-		RR42_RS11160	0.24	-0.4
2,385,076	+		RR42_RS11160	0.27	+0.1
2,385,076	+		RR42_RS11160	0.27	-0.7
2,385,076	+		RR42_RS11160	0.27	-1.0
2,385,076	+		RR42_RS11160	0.27	-2.2
2,385,076	+		RR42_RS11160	0.27	-1.2
2,385,076	+		RR42_RS11160	0.27	-1.0
2,385,077	-		RR42_RS11160	0.27	+0.2
2,385,077	-		RR42_RS11160	0.27	-0.4
2,385,426	+		RR42_RS11160	0.50	+0.1
2,385,426	+		RR42_RS11160	0.50	+0.3
2,385,427	-		RR42_RS11160	0.50	-0.6
2,385,526	+		RR42_RS11160	0.56	+0.6
2,385,527	-		RR42_RS11160	0.56	+0.8
2,385,532	+		RR42_RS11160	0.57	+0.5
2,385,532	+		RR42_RS11160	0.57	-0.4
2,385,533	-		RR42_RS11160	0.57	-0.1
2,385,533	-		RR42_RS11160	0.57	+0.8
2,385,533	-		RR42_RS11160	0.57	-0.2
2,385,533	-		RR42_RS11160	0.57	-1.6
2,385,826	+		RR42_RS11160	0.76	-0.3
2,385,827	-		RR42_RS11160	0.76	-2.1
2,386,015	+		RR42_RS11160	0.88	-0.6
2,386,015	+		RR42_RS11160	0.88	+0.5
2,386,015	+		RR42_RS11160	0.88	-0.2
2,386,141	+				+1.3
2,386,141	+				-0.7
2,386,223	+				+0.0
2,386,464	+		RR42_RS11165	0.29	-0.2
2,386,464	+		RR42_RS11165	0.29	+0.3
2,386,464	+		RR42_RS11165	0.29	-0.6
2,386,465	-		RR42_RS11165	0.29	-0.1
2,386,539	+		RR42_RS11165	0.46	-2.0
2,386,540	-		RR42_RS11165	0.46	-0.3