Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10955

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
2,339,506	+		RR42_RS10945	0.87	-0.9
2,339,506	+		RR42_RS10945	0.87	+0.2
2,339,506	+		RR42_RS10945	0.87	+0.2
2,339,506	+		RR42_RS10945	0.87	-0.3
2,339,506	+		RR42_RS10945	0.87	-0.5
2,339,506	+		RR42_RS10945	0.87	+0.2
2,339,507	-		RR42_RS10945	0.87	+1.1
2,339,507	-		RR42_RS10945	0.87	+0.1
2,339,567	+				+1.2
2,339,568	-				+0.4
2,339,610	+				-0.5
2,339,755	+		RR42_RS10950	0.20	-1.5
2,339,755	+		RR42_RS10950	0.20	+0.2
2,339,755	+		RR42_RS10950	0.20	+0.9
2,339,770	+		RR42_RS10950	0.23	+1.4
2,340,157	+				+0.5
2,340,234	+				-0.7
2,340,279	+				+0.1
2,340,282	+				-1.5
2,340,373	-				+0.0
2,340,418	-		RR42_RS10955	0.15	+0.3
2,340,560	+		RR42_RS10955	0.34	-0.5
2,340,560	+		RR42_RS10955	0.34	-0.1
2,340,561	-		RR42_RS10955	0.34	+1.1
2,340,818	+		RR42_RS10955	0.68	+0.3
2,340,819	-		RR42_RS10955	0.68	-0.5
2,340,847	+		RR42_RS10955	0.72	+0.3
2,340,964	+		RR42_RS10955	0.88	+0.1
2,340,964	+		RR42_RS10955	0.88	+0.2
2,340,965	-		RR42_RS10955	0.88	+0.8
2,340,965	-		RR42_RS10955	0.88	+0.5
2,340,965	-		RR42_RS10955	0.88	+0.5
2,340,965	-		RR42_RS10955	0.88	+0.7
2,340,965	-		RR42_RS10955	0.88	-0.3
2,340,965	-		RR42_RS10955	0.88	+0.5
2,340,965	-		RR42_RS10955	0.88	-0.2
2,340,965	-		RR42_RS10955	0.88	+1.0
2,340,965	-		RR42_RS10955	0.88	+0.7
2,340,965	-		RR42_RS10955	0.88	+0.1
2,340,968	+		RR42_RS10955	0.88	-1.2
2,340,968	+		RR42_RS10955	0.88	-0.5
2,340,968	+		RR42_RS10955	0.88	+0.3
2,340,968	+		RR42_RS10955	0.88	-0.4
2,340,968	+		RR42_RS10955	0.88	+0.1
2,340,969	-		RR42_RS10955	0.88	-0.0
2,340,969	-		RR42_RS10955	0.88	-0.1
2,340,969	-		RR42_RS10955	0.88	-1.5
2,341,181	+				-0.5
2,341,181	+				-0.1
2,341,181	+				-0.0
2,341,181	+				-0.2
2,341,181	+				+0.6
2,341,182	-				-0.7
2,341,182	-				-0.0
2,341,532	-		RR42_RS10960	0.48	-0.2
2,341,532	-		RR42_RS10960	0.48	+0.8
2,341,532	-		RR42_RS10960	0.48	+0.1
2,341,576	+		RR42_RS10960	0.53	-0.2
2,341,648	-		RR42_RS10960	0.61	+2.5
2,341,711	+		RR42_RS10960	0.68	-0.1
2,341,711	+		RR42_RS10960	0.68	+0.2
2,341,712	-		RR42_RS10960	0.68	+0.1
2,341,770	+		RR42_RS10960	0.75	-0.0
2,341,771	-		RR42_RS10960	0.75	-0.2
2,341,786	+		RR42_RS10960	0.77	+1.0
2,341,786	+		RR42_RS10960	0.77	+3.3
2,341,809	+		RR42_RS10960	0.79	-0.3
2,341,955	+				-0.8
2,341,955	+				-0.1
2,341,956	-				+0.7
2,341,956	-				+0.2
2,341,956	-				-1.4
2,341,956	-				-0.5