Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09260

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
1,956,197	+		RR42_RS09255	0.24	+1.3
1,956,379	+		RR42_RS09255	0.59	-0.3
1,956,379	+		RR42_RS09255	0.59	+1.2
1,956,449	+		RR42_RS09255	0.73	-0.3
1,956,449	+		RR42_RS09255	0.73	-0.0
1,956,519	+		RR42_RS09255	0.87	+0.4
1,956,520	-		RR42_RS09255	0.87	-0.0
1,956,659	+				+1.0
1,956,659	+				+0.1
1,956,659	+				+0.3
1,956,659	+				+0.4
1,956,660	-				+0.4
1,956,660	-				-0.5
1,956,660	-				+0.4
1,956,660	-				+0.3
1,956,660	-				-0.9
1,956,814	-				+1.0
1,956,818	+				-1.0
1,956,828	+				-0.4
1,956,828	+				+0.2
1,956,828	+				+0.4
1,956,828	+				+0.6
1,956,828	+				-0.1
1,956,829	-				-0.6
1,956,829	-				+0.3
1,956,829	-				+0.1
1,956,872	+				+0.4
1,956,878	+				+0.5
1,956,878	+				-0.2
1,956,887	-				-0.8
1,956,887	-				-0.4
1,956,897	+				+0.5
1,956,897	+				-0.8
1,957,028	-		RR42_RS09260	0.23	-1.2
1,957,028	-		RR42_RS09260	0.23	-1.2
1,957,030	+		RR42_RS09260	0.23	-0.3
1,957,031	-		RR42_RS09260	0.23	-0.7
1,957,031	-		RR42_RS09260	0.23	+0.6
1,957,031	-		RR42_RS09260	0.23	+0.0
1,957,075	+		RR42_RS09260	0.31	-0.6
1,957,148	-		RR42_RS09260	0.44	-0.4
1,957,148	-		RR42_RS09260	0.44	-0.8
1,957,164	+		RR42_RS09260	0.47	-1.6
1,957,261	+		RR42_RS09260	0.64	-0.6
1,957,262	-		RR42_RS09260	0.64	-2.2
1,957,462	+				+0.6
1,957,462	+				-0.3
1,957,462	+				+0.1
1,957,465	+				-0.0
1,957,465	+				+0.2
1,957,465	+				+2.0
1,957,465	+				+0.4
1,957,465	+				+1.2
1,957,465	+				+0.3
1,957,466	-				-0.0
1,957,466	-				-0.3
1,957,469	+				+0.1
1,957,469	+				+0.3
1,957,470	-				-1.0
1,957,549	+				-0.5
1,957,549	+				+0.3
1,957,550	-				+0.1
1,957,977	-		RR42_RS09265	0.19	-0.3
1,958,405	+		RR42_RS09265	0.44	-0.5
1,958,405	+		RR42_RS09265	0.44	+0.1
1,958,405	+		RR42_RS09265	0.44	-0.2
1,958,406	-		RR42_RS09265	0.44	-0.6
1,958,406	-		RR42_RS09265	0.44	-0.5
1,958,409	+		RR42_RS09265	0.44	+0.2
1,958,409	+		RR42_RS09265	0.44	-1.4
1,958,409	+		RR42_RS09265	0.44	+0.6
1,958,409	+		RR42_RS09265	0.44	-1.3
1,958,410	-		RR42_RS09265	0.44	-0.4
1,958,410	-		RR42_RS09265	0.44	+1.7
1,958,410	-		RR42_RS09265	0.44	-0.1
1,958,410	-		RR42_RS09265	0.44	+0.2
1,958,410	-		RR42_RS09265	0.44	-0.4