Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05940

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
1,307,278	+				-0.3
1,307,279	-				-0.3
1,307,279	-				+1.3
1,307,529	+		RR42_RS05930	0.65	+0.6
1,307,530	-		RR42_RS05930	0.65	+0.2
1,307,588	+		RR42_RS05930	0.80	-0.3
1,307,588	+		RR42_RS05930	0.80	-1.0
1,307,589	-		RR42_RS05930	0.80	-0.4
1,307,730	+		RR42_RS05935	0.14	+0.8
1,307,731	-		RR42_RS05935	0.15	-1.6
1,307,731	-		RR42_RS05935	0.15	+0.1
1,307,731	-		RR42_RS05935	0.15	+0.5
1,307,731	-		RR42_RS05935	0.15	-0.9
1,307,742	-		RR42_RS05935	0.22	-0.6
1,307,760	+		RR42_RS05935	0.33	-0.7
1,307,820	-		RR42_RS05935	0.72	+1.2
1,307,857	+				-0.2
1,307,857	+				-1.3
1,307,857	+				-0.7
1,307,858	-				-1.1
1,307,858	-				-0.1
1,307,858	-				+0.5
1,307,858	-				+0.6
1,307,968	+				-0.1
1,307,968	+				+0.2
1,307,968	+				-1.9
1,307,968	+				-1.1
1,307,969	-				+0.1
1,307,969	-				+0.0
1,307,969	-				+0.1
1,307,969	-				-0.0
1,307,977	+				+0.9
1,307,978	-				-0.2
1,307,999	+				-0.1
1,308,070	-				-0.0
1,308,070	-				-0.0
1,308,071	+				+0.3
1,308,071	+				+0.3
1,308,071	+				-0.7
1,308,071	+				-1.1
1,308,071	+				+0.1
1,308,125	+				+0.6
1,308,693	+				+0.5
1,308,784	+				-0.3
1,308,784	+				+0.8
1,308,784	+				-0.7
1,308,784	+				+1.2
1,308,785	-				-0.0
1,308,785	-				-1.6
1,308,785	-				-0.8
1,309,005	+		RR42_RS05945	0.47	-1.1
1,309,006	-		RR42_RS05945	0.47	-0.5
1,309,052	+		RR42_RS05945	0.58	+1.8
1,309,052	+		RR42_RS05945	0.58	-1.8
1,309,291	+				+0.5
1,309,292	-				-0.2
1,309,292	-				+0.3
1,309,324	+				-0.5
1,309,324	+				+0.5
1,309,325	-				-0.1
1,309,340	-				-0.4
1,309,375	+		RR42_RS05950	0.11	-0.7
1,309,376	-		RR42_RS05950	0.11	+0.6
1,309,376	-		RR42_RS05950	0.11	+0.2
1,309,376	-		RR42_RS05950	0.11	+0.3
1,309,402	+		RR42_RS05950	0.13	+0.9
1,309,405	+		RR42_RS05950	0.13	+0.1
1,309,406	-		RR42_RS05950	0.14	+0.2
1,309,406	-		RR42_RS05950	0.14	-0.7
1,309,406	-		RR42_RS05950	0.14	+1.3
1,309,483	+		RR42_RS05950	0.20	-0.5
1,309,528	+		RR42_RS05950	0.23	-0.4
1,309,528	+		RR42_RS05950	0.23	-1.3
1,309,528	+		RR42_RS05950	0.23	+0.0
1,309,529	-		RR42_RS05950	0.24	-0.5
1,309,529	-		RR42_RS05950	0.24	+0.0
1,309,529	-		RR42_RS05950	0.24	+1.5
1,309,531	+		RR42_RS05950	0.24	-0.1
1,309,531	+				-0.4
1,309,531	+		RR42_RS05950	0.24	-0.1
1,309,532	-		RR42_RS05950	0.24	+0.2
1,309,532	-		RR42_RS05950	0.24	+0.5
1,309,532	-		RR42_RS05950	0.24	+0.7
1,309,534	+		RR42_RS05950	0.24	+0.6
1,309,534	+		RR42_RS05950	0.24	+1.4
1,309,535	-		RR42_RS05950	0.24	+0.6
1,309,535	-		RR42_RS05950	0.24	+0.2
1,309,535	-		RR42_RS05950	0.24	+0.3
1,309,569	+		RR42_RS05950	0.27	-0.4
1,309,569	+		RR42_RS05950	0.27	+0.5
1,309,569	+		RR42_RS05950	0.27	+0.4
1,309,569	+		RR42_RS05950	0.27	-2.1
1,309,569	+		RR42_RS05950	0.27	+0.8
1,309,569	+		RR42_RS05950	0.27	+0.0
1,309,570	-		RR42_RS05950	0.27	+0.6
1,309,570	-		RR42_RS05950	0.27	+0.1
1,309,570	-		RR42_RS05950	0.27	+1.3
1,309,607	+		RR42_RS05950	0.30	+1.2
1,309,608	-		RR42_RS05950	0.30	-0.1
1,309,608	-		RR42_RS05950	0.30	-0.5