Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04595

Experiment: R2A with D-Cycloserine 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.01 mg/ml
1,024,221	+		RR42_RS04585	0.74	+1.3
1,024,222	-		RR42_RS04585	0.74	+2.2
1,024,222	-		RR42_RS04585	0.74	+0.8
1,024,260	+		RR42_RS04585	0.77	+1.6
1,024,260	+		RR42_RS04585	0.77	+1.3
1,024,261	-		RR42_RS04585	0.77	+1.5
1,024,410	+		RR42_RS04585	0.88	+1.9
1,024,422	-		RR42_RS04585	0.89	+2.6
1,024,509	+				+2.2
1,024,532	+				+2.1
1,024,532	+				+1.6
1,024,533	-				+2.2
1,024,533	-				+1.8
1,024,533	-				+1.9
1,024,533	-				+2.1
1,024,562	-				+0.9
1,024,595	+				+2.5
1,024,596	-				+1.2
1,024,604	+				+2.3
1,024,605	-				+1.7
1,024,605	-				+1.5
1,024,611	-				-1.6
1,024,613	-				+1.4
1,024,615	+				+1.9
1,024,616	-				+0.7
1,024,666	-				+2.2
1,024,669	+				+1.9
1,024,694	-				+2.9
1,024,751	+		RR42_RS04590	0.16	+2.0
1,024,751	+		RR42_RS04590	0.16	+0.7
1,024,751	+		RR42_RS04590	0.16	+2.2
1,024,751	+		RR42_RS04590	0.16	+1.6
1,024,848	+		RR42_RS04590	0.35	+1.8
1,024,849	-		RR42_RS04590	0.35	+1.1
1,024,851	+		RR42_RS04590	0.36	+3.7
1,024,851	+		RR42_RS04590	0.36	+1.7
1,024,851	+		RR42_RS04590	0.36	+2.3
1,024,852	-		RR42_RS04590	0.36	+1.4
1,024,931	+		RR42_RS04590	0.52	+3.4
1,024,931	+		RR42_RS04590	0.52	+1.8
1,024,931	+		RR42_RS04590	0.52	+2.1
1,024,931	+		RR42_RS04590	0.52	+2.4
1,024,931	+		RR42_RS04590	0.52	+2.6
1,024,932	-		RR42_RS04590	0.52	+2.0
1,024,932	-		RR42_RS04590	0.52	+1.9
1,024,932	-		RR42_RS04590	0.52	+0.9
1,024,975	+		RR42_RS04590	0.60	+1.6
1,024,976	-		RR42_RS04590	0.61	+1.3
1,024,976	-		RR42_RS04590	0.61	+0.4
1,025,010	+		RR42_RS04590	0.67	+2.3
1,025,047	-		RR42_RS04590	0.75	+2.9
1,025,106	+		RR42_RS04590	0.86	+1.9
1,025,106	+		RR42_RS04590	0.86	+1.5
1,025,106	+		RR42_RS04590	0.86	+1.4
1,025,107	-		RR42_RS04590	0.87	+1.7
1,025,107	-		RR42_RS04590	0.87	+1.1
1,025,107	-		RR42_RS04590	0.87	+1.2
1,025,201	+				+1.2
1,025,201	+				+1.1
1,025,202	-				+0.9
1,025,369	+		RR42_RS04595	0.16	-0.6
1,025,370	-		RR42_RS04595	0.16	+0.2
1,025,432	+		RR42_RS04595	0.21	+0.9
1,025,432	+		RR42_RS04595	0.21	+0.8
1,025,432	+		RR42_RS04595	0.21	+0.9
1,025,432	+		RR42_RS04595	0.21	+0.6
1,025,432	+		RR42_RS04595	0.21	+1.4
1,025,433	-		RR42_RS04595	0.22	-0.2
1,025,433	-		RR42_RS04595	0.22	+0.5
1,025,433	-		RR42_RS04595	0.22	+0.2
1,025,433	-		RR42_RS04595	0.22	+0.8
1,025,433	-		RR42_RS04595	0.22	+1.6
1,025,490	+		RR42_RS04595	0.27	+0.6
1,025,490	+		RR42_RS04595	0.27	+1.1
1,025,491	-		RR42_RS04595	0.27	+0.6
1,025,492	+		RR42_RS04595	0.27	-0.3
1,025,492	+		RR42_RS04595	0.27	+0.6
1,025,492	+		RR42_RS04595	0.27	+0.7
1,025,492	+		RR42_RS04595	0.27	-0.4
1,025,492	+		RR42_RS04595	0.27	+0.4
1,025,492	+		RR42_RS04595	0.27	+1.2
1,025,493	-		RR42_RS04595	0.27	+0.3
1,025,493	-		RR42_RS04595	0.27	+0.6
1,025,694	+		RR42_RS04595	0.46	+0.4
1,025,694	+		RR42_RS04595	0.46	+0.9
1,025,695	-		RR42_RS04595	0.46	+0.8
1,025,703	+		RR42_RS04595	0.46	-0.9
1,025,703	+		RR42_RS04595	0.46	+0.5
1,025,703	+		RR42_RS04595	0.46	+1.2
1,025,704	-		RR42_RS04595	0.47	+0.1
1,025,704	-		RR42_RS04595	0.47	-0.3
1,025,704	-		RR42_RS04595	0.47	+0.2
1,025,861	+		RR42_RS04595	0.61	+0.0
1,025,871	+		RR42_RS04595	0.62	+0.4
1,025,871	+		RR42_RS04595	0.62	-1.0
1,025,872	-		RR42_RS04595	0.62	+2.2
1,025,900	-		RR42_RS04595	0.65	+0.1
1,025,903	+		RR42_RS04595	0.65	+0.6
1,025,903	+		RR42_RS04595	0.65	+0.7
1,025,903	+		RR42_RS04595	0.65	-0.2
1,025,903	+		RR42_RS04595	0.65	+1.2
1,025,903	+		RR42_RS04595	0.65	+0.3
1,025,903	+		RR42_RS04595	0.65	+0.1
1,025,903	+		RR42_RS04595	0.65	-0.4
1,025,903	+		RR42_RS04595	0.65	+0.6
1,025,904	-		RR42_RS04595	0.65	+1.0
1,025,904	-		RR42_RS04595	0.65	+0.1
1,025,904	-		RR42_RS04595	0.65	+0.5
1,025,904	-		RR42_RS04595	0.65	+0.4
1,025,904	-		RR42_RS04595	0.65	+0.2
1,026,020	+		RR42_RS04595	0.76	+0.1
1,026,020	+		RR42_RS04595	0.76	+0.3
1,026,021	-		RR42_RS04595	0.76	-0.3
1,026,021	-		RR42_RS04595	0.76	+0.4
1,026,021	-		RR42_RS04595	0.76	+0.3
1,026,021	-		RR42_RS04595	0.76	-0.1
1,026,026	+		RR42_RS04595	0.76	+0.6
1,026,026	+		RR42_RS04595	0.76	-0.2
1,026,026	+		RR42_RS04595	0.76	+2.2
1,026,026	+		RR42_RS04595	0.76	+0.3
1,026,026	+		RR42_RS04595	0.76	+1.2
1,026,026	+		RR42_RS04595	0.76	+0.5
1,026,027	-		RR42_RS04595	0.76	-0.0
1,026,027	-		RR42_RS04595	0.76	+0.5
1,026,027	-		RR42_RS04595	0.76	+0.2
1,026,027	-		RR42_RS04595	0.76	+0.5
1,026,027	-		RR42_RS04595	0.76	+2.8
1,026,027	-		RR42_RS04595	0.76	-0.3
1,026,027	-		RR42_RS04595	0.76	-0.5
1,026,027	-		RR42_RS04595	0.76	+0.1
1,026,027	-		RR42_RS04595	0.76	+0.0
1,026,030	+		RR42_RS04595	0.77	+0.5
1,026,030	+		RR42_RS04595	0.77	+0.7
1,026,030	+		RR42_RS04595	0.77	-0.0
1,026,030	+		RR42_RS04595	0.77	+0.5
1,026,030	+		RR42_RS04595	0.77	+0.9
1,026,030	+		RR42_RS04595	0.77	+0.0
1,026,030	+		RR42_RS04595	0.77	+0.1
1,026,030	+		RR42_RS04595	0.77	+0.5
1,026,030	+		RR42_RS04595	0.77	+0.8
1,026,030	+		RR42_RS04595	0.77	+0.4
1,026,030	+		RR42_RS04595	0.77	+0.0
1,026,030	+		RR42_RS04595	0.77	+0.1
1,026,030	+		RR42_RS04595	0.77	-0.2
1,026,031	-		RR42_RS04595	0.77	+0.7
1,026,031	-		RR42_RS04595	0.77	-0.1
1,026,031	-		RR42_RS04595	0.77	-0.4
1,026,031	-		RR42_RS04595	0.77	+0.2
1,026,031	-		RR42_RS04595	0.77	+0.2
1,026,031	-		RR42_RS04595	0.77	+0.2
1,026,300	+				+0.1
1,026,301	-				+0.1
1,026,336	+				+0.4
1,026,336	+				-0.3
1,026,356	-				+0.2
1,026,394	+				+0.2
1,026,547	+		RR42_RS04600	0.21	+0.7
1,026,547	+		RR42_RS04600	0.21	-0.4
1,026,548	-		RR42_RS04600	0.21	+0.4
1,026,548	-		RR42_RS04600	0.21	+0.4
1,027,158	+		RR42_RS04600	0.87	-1.3
1,027,158	+		RR42_RS04600	0.87	-0.2
1,027,159	-		RR42_RS04600	0.87	-0.3