Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04245 and RR42_RS04250 are separated by 26 nucleotides RR42_RS04250 and RR42_RS04255 are separated by 66 nucleotides RR42_RS04255 and RR42_RS04260 are separated by 87 nucleotides
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
RR42_RS04250: RR42_RS04250 - chemotaxis protein CheY, at 940,069 to 940,437
_RS04250
RR42_RS04255: RR42_RS04255 - chemotaxis protein CheW, at 940,504 to 941,091
_RS04255
RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347
_RS04260
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1 at 939.564 kb on + strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.575 kb on - strand at 939.964 kb on + strand, within RR42_RS04245 at 939.965 kb on - strand, within RR42_RS04245 at 939.965 kb on - strand, within RR42_RS04245 at 939.991 kb on - strand, within RR42_RS04245 at 940.074 kb on + strand at 940.075 kb on - strand at 940.075 kb on - strand at 940.075 kb on - strand at 940.256 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.555 kb on + strand at 940.555 kb on + strand at 940.723 kb on + strand, within RR42_RS04255 at 940.723 kb on + strand, within RR42_RS04255 at 941.178 kb on + strand at 941.179 kb on - strand at 941.179 kb on - strand at 941.387 kb on - strand at 941.387 kb on - strand at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 939,564 + +0.2 939,565 - -0.4 939,565 - +0.3 939,565 - -0.7 939,565 - +0.1 939,575 - +0.2 939,964 + RR42_RS04245 0.84 -0.1 939,965 - RR42_RS04245 0.84 -0.7 939,965 - RR42_RS04245 0.84 +0.1 939,991 - RR42_RS04245 0.89 +0.8 940,074 + +0.5 940,075 - +0.8 940,075 - -0.9 940,075 - -0.5 940,256 - RR42_RS04250 0.51 +0.6 940,376 - RR42_RS04250 0.83 +0.2 940,376 - RR42_RS04250 0.83 +0.4 940,376 - RR42_RS04250 0.83 -0.6 940,376 - RR42_RS04250 0.83 +0.3 940,555 + -1.2 940,555 + +0.0 940,723 + RR42_RS04255 0.37 -1.6 940,723 + RR42_RS04255 0.37 -0.5 941,178 + +0.1 941,179 - +0.3 941,179 - +0.3 941,387 - -0.9 941,387 - +0.6 941,926 - RR42_RS04260 0.34 +0.4 941,926 - RR42_RS04260 0.34 +0.3 941,926 - RR42_RS04260 0.34 +0.3 941,926 - RR42_RS04260 0.34 -0.1 941,926 - RR42_RS04260 0.34 -0.2
Or see this region's nucleotide sequence