Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03475 and RR42_RS03480 are separated by 153 nucleotides RR42_RS03480 and RR42_RS03485 are separated by 202 nucleotides RR42_RS03485 and RR42_RS03490 are separated by 2 nucleotides
RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606
_RS03475
RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341
_RS03480
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
RR42_RS03490: RR42_RS03490 - type VI secretion protein, at 774,584 to 775,624
_RS03490
Position (kb) 773
774
775 Strain fitness (log2 ratio) -1
0
1
2 at 772.605 kb on - strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.661 kb on - strand at 772.661 kb on - strand at 773.357 kb on + strand at 773.477 kb on - strand at 773.499 kb on - strand at 773.646 kb on + strand at 773.646 kb on + strand at 773.945 kb on - strand, within RR42_RS03485 at 774.418 kb on + strand, within RR42_RS03485 at 774.419 kb on - strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.476 kb on - strand, within RR42_RS03485 at 774.755 kb on + strand, within RR42_RS03490 at 774.755 kb on + strand, within RR42_RS03490 at 774.756 kb on - strand, within RR42_RS03490 at 774.819 kb on + strand, within RR42_RS03490 at 774.820 kb on - strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 772,605 - +0.1 772,657 + -0.2 772,657 + +0.3 772,657 + +0.2 772,658 - +0.6 772,658 - -0.3 772,658 - +1.1 772,661 - +0.3 772,661 - -1.4 773,357 + +0.8 773,477 - -0.4 773,499 - +0.4 773,646 + -0.4 773,646 + -0.2 773,945 - RR42_RS03485 0.39 -0.7 774,418 + RR42_RS03485 0.84 -0.7 774,419 - RR42_RS03485 0.84 +0.6 774,475 + RR42_RS03485 0.90 -0.2 774,475 + RR42_RS03485 0.90 -0.2 774,476 - RR42_RS03485 0.90 -1.4 774,755 + RR42_RS03490 0.16 -1.0 774,755 + RR42_RS03490 0.16 -1.7 774,756 - RR42_RS03490 0.17 +1.3 774,819 + RR42_RS03490 0.23 -0.5 774,820 - RR42_RS03490 0.23 -0.9 774,978 + RR42_RS03490 0.38 -0.3 774,978 + RR42_RS03490 0.38 +1.3 774,978 + RR42_RS03490 0.38 +0.2 774,979 - RR42_RS03490 0.38 +1.9 774,979 - RR42_RS03490 0.38 -0.3 774,979 - RR42_RS03490 0.38 -0.3 774,979 - RR42_RS03490 0.38 +0.1 775,146 + RR42_RS03490 0.54 +0.6 775,146 + RR42_RS03490 0.54 -0.3 775,215 + RR42_RS03490 0.61 -0.2 775,215 + RR42_RS03490 0.61 -0.2 775,216 - RR42_RS03490 0.61 -0.9 775,216 - RR42_RS03490 0.61 -0.1 775,560 + +0.4
Or see this region's nucleotide sequence