Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02260 and RR42_RS02265 are separated by 343 nucleotides RR42_RS02265 and RR42_RS02270 are separated by 297 nucleotides RR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides
RR42_RS02260: RR42_RS02260 - cytochrome C peroxidase, at 500,877 to 502,229
_RS02260
RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392
_RS02265
RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974
_RS02270
RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287
_RS02275
Position (kb) 502
503
504
505
506
507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.615 kb on + strand, within RR42_RS02260 at 501.622 kb on - strand, within RR42_RS02260 at 501.634 kb on - strand, within RR42_RS02260 at 501.900 kb on + strand, within RR42_RS02260 at 501.901 kb on - strand, within RR42_RS02260 at 502.107 kb on - strand at 502.107 kb on - strand at 502.270 kb on + strand at 502.271 kb on - strand at 502.426 kb on + strand at 502.445 kb on + strand at 502.547 kb on + strand at 502.547 kb on + strand at 502.548 kb on - strand at 502.558 kb on + strand at 502.559 kb on - strand at 502.984 kb on + strand at 502.985 kb on - strand at 503.105 kb on - strand at 503.266 kb on + strand, within RR42_RS02265 at 503.266 kb on + strand, within RR42_RS02265 at 503.354 kb on - strand, within RR42_RS02265 at 503.655 kb on + strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.666 kb on - strand, within RR42_RS02265 at 503.690 kb on - strand, within RR42_RS02265 at 503.690 kb on - strand, within RR42_RS02265 at 503.708 kb on - strand, within RR42_RS02265 at 503.708 kb on - strand, within RR42_RS02265 at 503.719 kb on - strand, within RR42_RS02265 at 503.740 kb on + strand, within RR42_RS02265 at 503.749 kb on + strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.972 kb on + strand, within RR42_RS02265 at 504.255 kb on + strand, within RR42_RS02265 at 504.751 kb on + strand, within RR42_RS02265 at 504.752 kb on - strand, within RR42_RS02265 at 504.752 kb on - strand, within RR42_RS02265 at 504.817 kb on + strand, within RR42_RS02265 at 504.818 kb on - strand, within RR42_RS02265 at 504.819 kb on + strand, within RR42_RS02265 at 504.919 kb on + strand, within RR42_RS02265 at 505.127 kb on - strand, within RR42_RS02265 at 505.127 kb on - strand, within RR42_RS02265 at 505.195 kb on + strand, within RR42_RS02265 at 505.224 kb on + strand, within RR42_RS02265 at 505.517 kb on - strand, within RR42_RS02265 at 505.948 kb on + strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.098 kb on + strand, within RR42_RS02265 at 506.428 kb on + strand, within RR42_RS02265 at 506.429 kb on - strand, within RR42_RS02265 at 506.458 kb on + strand, within RR42_RS02265 at 506.840 kb on - strand, within RR42_RS02265 at 506.939 kb on - strand, within RR42_RS02265 at 507.283 kb on - strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.651 kb on + strand, within RR42_RS02265 at 507.652 kb on - strand, within RR42_RS02265 at 507.955 kb on - strand at 507.997 kb on + strand at 508.126 kb on + strand at 508.126 kb on + strand at 508.127 kb on - strand at 508.127 kb on - strand at 508.871 kb on - strand, within RR42_RS02270 at 509.033 kb on + strand at 509.075 kb on + strand at 509.076 kb on - strand at 509.305 kb on - strand, within RR42_RS02275 at 509.305 kb on - strand, within RR42_RS02275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 501,615 + RR42_RS02260 0.55 +1.0 501,622 - RR42_RS02260 0.55 +0.3 501,634 - RR42_RS02260 0.56 +1.7 501,900 + RR42_RS02260 0.76 -1.3 501,901 - RR42_RS02260 0.76 +0.1 502,107 - +0.4 502,107 - -0.5 502,270 + -0.4 502,271 - -1.8 502,426 + +1.1 502,445 + +0.3 502,547 + -0.2 502,547 + -0.2 502,548 - +0.3 502,558 + -0.4 502,559 - -1.0 502,984 + -0.2 502,985 - -0.0 503,105 - +1.2 503,266 + RR42_RS02265 0.12 -0.2 503,266 + RR42_RS02265 0.12 +0.4 503,354 - RR42_RS02265 0.13 -0.3 503,655 + RR42_RS02265 0.19 +0.7 503,656 - RR42_RS02265 0.19 +0.1 503,656 - RR42_RS02265 0.19 +0.3 503,656 - RR42_RS02265 0.19 -0.3 503,666 - RR42_RS02265 0.19 -0.0 503,690 - RR42_RS02265 0.19 -0.1 503,690 - RR42_RS02265 0.19 +0.5 503,708 - RR42_RS02265 0.20 +0.5 503,708 - RR42_RS02265 0.20 -0.7 503,719 - RR42_RS02265 0.20 +0.6 503,740 + RR42_RS02265 0.20 -0.3 503,749 + RR42_RS02265 0.20 -0.3 503,750 - RR42_RS02265 0.20 +1.9 503,750 - RR42_RS02265 0.20 +0.9 503,750 - RR42_RS02265 0.20 -0.1 503,750 - RR42_RS02265 0.20 +0.9 503,972 + RR42_RS02265 0.24 +0.0 504,255 + RR42_RS02265 0.29 +1.0 504,751 + RR42_RS02265 0.37 -1.7 504,752 - RR42_RS02265 0.37 -1.3 504,752 - RR42_RS02265 0.37 -0.0 504,817 + RR42_RS02265 0.39 +0.2 504,818 - RR42_RS02265 0.39 +0.8 504,819 + RR42_RS02265 0.39 +0.0 504,919 + RR42_RS02265 0.40 +0.7 505,127 - RR42_RS02265 0.44 +0.1 505,127 - RR42_RS02265 0.44 -0.7 505,195 + RR42_RS02265 0.45 -0.6 505,224 + RR42_RS02265 0.46 +2.5 505,517 - RR42_RS02265 0.51 +0.8 505,948 + RR42_RS02265 0.58 +0.4 505,949 - RR42_RS02265 0.58 +0.1 505,949 - RR42_RS02265 0.58 -0.2 505,949 - RR42_RS02265 0.58 -0.1 505,949 - RR42_RS02265 0.58 +0.2 506,041 + RR42_RS02265 0.60 +1.1 506,041 + RR42_RS02265 0.60 +0.7 506,041 + RR42_RS02265 0.60 +1.1 506,098 + RR42_RS02265 0.61 -0.1 506,428 + RR42_RS02265 0.66 +0.6 506,429 - RR42_RS02265 0.66 -0.3 506,458 + RR42_RS02265 0.67 +0.1 506,840 - RR42_RS02265 0.73 +0.3 506,939 - RR42_RS02265 0.75 +0.2 507,283 - RR42_RS02265 0.81 -1.4 507,649 + RR42_RS02265 0.87 +0.9 507,649 + RR42_RS02265 0.87 -0.4 507,649 + RR42_RS02265 0.87 -0.1 507,649 + RR42_RS02265 0.87 +0.5 507,650 - RR42_RS02265 0.87 +0.5 507,650 - RR42_RS02265 0.87 +0.2 507,650 - RR42_RS02265 0.87 +0.1 507,651 + RR42_RS02265 0.87 +0.3 507,652 - RR42_RS02265 0.87 +0.9 507,955 - -0.8 507,997 + -0.7 508,126 + +0.2 508,126 + -0.4 508,127 - +0.6 508,127 - +1.7 508,871 - RR42_RS02270 0.64 -0.3 509,033 + -0.6 509,075 + -1.1 509,076 - +0.2 509,305 - RR42_RS02275 0.18 -0.5 509,305 - RR42_RS02275 0.18 -0.5
Or see this region's nucleotide sequence