Experiment: R2A with D-Cycloserine 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01700 and RR42_RS01705 are separated by 8 nucleotides RR42_RS01705 and RR42_RS01710 are separated by 141 nucleotides
RR42_RS01700: RR42_RS01700 - ATPase, at 386,509 to 388,494
_RS01700
RR42_RS01705: RR42_RS01705 - Fis family transcriptional regulator, at 388,503 to 389,819
_RS01705
RR42_RS01710: RR42_RS01710 - tyrosine ammonia-lyase, at 389,961 to 391,559
_RS01710
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 387.520 kb on + strand, within RR42_RS01700 at 388.419 kb on - strand at 388.419 kb on - strand at 388.549 kb on + strand at 388.550 kb on - strand at 388.778 kb on - strand, within RR42_RS01705 at 388.801 kb on - strand, within RR42_RS01705 at 389.409 kb on + strand, within RR42_RS01705 at 389.409 kb on + strand, within RR42_RS01705 at 389.697 kb on + strand at 389.697 kb on + strand at 389.721 kb on - strand at 389.721 kb on - strand at 389.790 kb on + strand at 389.887 kb on + strand at 389.936 kb on - strand at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.126 kb on + strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.127 kb on - strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.161 kb on + strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.162 kb on - strand, within RR42_RS01710 at 390.342 kb on + strand, within RR42_RS01710 at 390.493 kb on + strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.494 kb on - strand, within RR42_RS01710 at 390.538 kb on + strand, within RR42_RS01710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml remove 387,520 + RR42_RS01700 0.51 +0.1 388,419 - +0.2 388,419 - +0.5 388,549 + -0.2 388,550 - +0.3 388,778 - RR42_RS01705 0.21 -1.8 388,801 - RR42_RS01705 0.23 +0.6 389,409 + RR42_RS01705 0.69 +0.9 389,409 + RR42_RS01705 0.69 -1.6 389,697 + -0.0 389,697 + +0.1 389,721 - -0.4 389,721 - -1.0 389,790 + -0.4 389,887 + -0.3 389,936 - +0.1 390,126 + RR42_RS01710 0.10 +0.4 390,126 + RR42_RS01710 0.10 -0.1 390,126 + RR42_RS01710 0.10 +0.1 390,127 - RR42_RS01710 0.10 -0.6 390,127 - RR42_RS01710 0.10 +0.3 390,127 - RR42_RS01710 0.10 -0.5 390,161 + RR42_RS01710 0.13 +0.0 390,161 + RR42_RS01710 0.13 -0.1 390,162 - RR42_RS01710 0.13 +0.9 390,162 - RR42_RS01710 0.13 -0.2 390,162 - RR42_RS01710 0.13 +0.2 390,342 + RR42_RS01710 0.24 +0.6 390,493 + RR42_RS01710 0.33 +0.2 390,494 - RR42_RS01710 0.33 +0.6 390,494 - RR42_RS01710 0.33 +0.2 390,538 + RR42_RS01710 0.36 -0.1
Or see this region's nucleotide sequence