Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00430

Experiment: R2A with D-Cycloserine 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00425 and RR42_RS00430 are separated by 17 nucleotidesRR42_RS00430 and RR42_RS00435 are separated by 232 nucleotides RR42_RS00425: RR42_RS00425 - ABC transporter substrate-binding protein, at 112,011 to 113,024 _RS00425 RR42_RS00430: RR42_RS00430 - histidine kinase, at 113,042 to 113,734 _RS00430 RR42_RS00435: RR42_RS00435 - transcriptional regulator, at 113,967 to 114,665 _RS00435 Position (kb) 113 114Strain fitness (log2 ratio) -2 -1 0 1at 112.129 kb on - strand, within RR42_RS00425at 112.374 kb on + strand, within RR42_RS00425at 112.375 kb on - strand, within RR42_RS00425at 112.375 kb on - strand, within RR42_RS00425at 112.375 kb on - strand, within RR42_RS00425at 112.375 kb on - strand, within RR42_RS00425at 112.599 kb on + strand, within RR42_RS00425at 113.082 kb on + strandat 113.082 kb on + strandat 113.082 kb on + strandat 113.082 kb on + strandat 113.082 kb on + strandat 113.083 kb on - strandat 113.083 kb on - strandat 113.083 kb on - strandat 113.332 kb on - strand, within RR42_RS00430at 113.601 kb on + strand, within RR42_RS00430at 113.602 kb on - strand, within RR42_RS00430at 113.773 kb on - strandat 113.862 kb on + strandat 113.863 kb on - strandat 113.863 kb on - strandat 113.917 kb on + strandat 113.966 kb on + strandat 113.966 kb on + strandat 113.966 kb on + strandat 114.050 kb on + strand, within RR42_RS00435at 114.051 kb on - strand, within RR42_RS00435at 114.261 kb on + strand, within RR42_RS00435at 114.261 kb on + strand, within RR42_RS00435at 114.261 kb on + strand, within RR42_RS00435at 114.262 kb on - strand, within RR42_RS00435at 114.262 kb on - strand, within RR42_RS00435at 114.372 kb on + strand, within RR42_RS00435at 114.372 kb on + strand, within RR42_RS00435at 114.372 kb on + strand, within RR42_RS00435at 114.372 kb on + strand, within RR42_RS00435at 114.552 kb on - strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.557 kb on + strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.558 kb on - strand, within RR42_RS00435at 114.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.01 mg/ml
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112,129 - RR42_RS00425 0.12 +0.1
112,374 + RR42_RS00425 0.36 -0.0
112,375 - RR42_RS00425 0.36 -0.6
112,375 - RR42_RS00425 0.36 +0.4
112,375 - RR42_RS00425 0.36 +0.4
112,375 - RR42_RS00425 0.36 -0.1
112,599 + RR42_RS00425 0.58 -0.4
113,082 + -1.4
113,082 + +0.1
113,082 + -0.0
113,082 + +0.3
113,082 + -0.5
113,083 - -0.2
113,083 - -0.5
113,083 - +0.1
113,332 - RR42_RS00430 0.42 +1.1
113,601 + RR42_RS00430 0.81 +1.6
113,602 - RR42_RS00430 0.81 +0.4
113,773 - +0.8
113,862 + +0.6
113,863 - +1.3
113,863 - -0.4
113,917 + +1.4
113,966 + -1.7
113,966 + -0.7
113,966 + +0.1
114,050 + RR42_RS00435 0.12 +1.1
114,051 - RR42_RS00435 0.12 -0.1
114,261 + RR42_RS00435 0.42 +0.0
114,261 + RR42_RS00435 0.42 +0.8
114,261 + RR42_RS00435 0.42 -0.1
114,262 - RR42_RS00435 0.42 -0.4
114,262 - RR42_RS00435 0.42 -0.4
114,372 + RR42_RS00435 0.58 -0.4
114,372 + RR42_RS00435 0.58 +0.3
114,372 + RR42_RS00435 0.58 -0.6
114,372 + RR42_RS00435 0.58 +1.3
114,552 - RR42_RS00435 0.84 -0.1
114,557 + RR42_RS00435 0.84 +0.3
114,557 + RR42_RS00435 0.84 -0.4
114,557 + RR42_RS00435 0.84 -0.2
114,557 + RR42_RS00435 0.84 +0.6
114,557 + RR42_RS00435 0.84 -0.2
114,557 + RR42_RS00435 0.84 +0.3
114,557 + RR42_RS00435 0.84 -0.2
114,557 + RR42_RS00435 0.84 +0.6
114,557 + RR42_RS00435 0.84 +0.7
114,558 - RR42_RS00435 0.85 -0.1
114,558 - RR42_RS00435 0.85 -0.0
114,558 - RR42_RS00435 0.85 -0.4
114,558 - RR42_RS00435 0.85 -2.7
114,558 - RR42_RS00435 0.85 +0.7
114,558 - RR42_RS00435 0.85 +0.3
114,558 - RR42_RS00435 0.85 +0.1
114,558 - RR42_RS00435 0.85 -0.3
114,621 + +0.8

Or see this region's nucleotide sequence