Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5655

Experiment: Chlorite 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5654 and Pf6N2E2_5655 are separated by 260 nucleotidesPf6N2E2_5655 and Pf6N2E2_5656 are separated by 460 nucleotides Pf6N2E2_5654 - FIG00957532: hypothetical protein, at 6,465,056 to 6,466,042 _5654 Pf6N2E2_5655 - Prophage antirepressor, at 6,466,303 to 6,466,752 _5655 Pf6N2E2_5656 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 6,467,213 to 6,468,460 _5656 Position (kb) 6466 6467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6465.381 kb on + strand, within Pf6N2E2_5654at 6465.411 kb on + strand, within Pf6N2E2_5654at 6465.411 kb on + strand, within Pf6N2E2_5654at 6465.412 kb on - strand, within Pf6N2E2_5654at 6465.412 kb on - strand, within Pf6N2E2_5654at 6465.438 kb on + strand, within Pf6N2E2_5654at 6465.681 kb on + strand, within Pf6N2E2_5654at 6465.681 kb on + strand, within Pf6N2E2_5654at 6465.681 kb on + strand, within Pf6N2E2_5654at 6465.681 kb on + strand, within Pf6N2E2_5654at 6465.682 kb on - strand, within Pf6N2E2_5654at 6465.682 kb on - strand, within Pf6N2E2_5654at 6465.682 kb on - strand, within Pf6N2E2_5654at 6465.789 kb on + strand, within Pf6N2E2_5654at 6465.789 kb on + strand, within Pf6N2E2_5654at 6465.789 kb on + strand, within Pf6N2E2_5654at 6465.789 kb on + strand, within Pf6N2E2_5654at 6465.789 kb on + strand, within Pf6N2E2_5654at 6465.790 kb on - strand, within Pf6N2E2_5654at 6465.790 kb on - strand, within Pf6N2E2_5654at 6465.790 kb on - strand, within Pf6N2E2_5654at 6465.790 kb on - strand, within Pf6N2E2_5654at 6465.805 kb on + strand, within Pf6N2E2_5654at 6465.806 kb on - strand, within Pf6N2E2_5654at 6465.849 kb on + strand, within Pf6N2E2_5654at 6465.849 kb on + strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.850 kb on - strand, within Pf6N2E2_5654at 6465.990 kb on + strandat 6465.991 kb on - strandat 6465.991 kb on - strandat 6465.991 kb on - strandat 6466.024 kb on - strandat 6466.072 kb on + strandat 6466.073 kb on - strandat 6466.075 kb on + strandat 6466.075 kb on + strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.076 kb on - strandat 6466.078 kb on + strandat 6466.131 kb on + strandat 6466.173 kb on + strandat 6466.173 kb on + strandat 6466.174 kb on - strandat 6466.482 kb on + strand, within Pf6N2E2_5655at 6466.482 kb on + strand, within Pf6N2E2_5655at 6466.509 kb on + strand, within Pf6N2E2_5655at 6466.510 kb on - strand, within Pf6N2E2_5655at 6466.523 kb on + strand, within Pf6N2E2_5655at 6466.524 kb on - strand, within Pf6N2E2_5655at 6466.524 kb on - strand, within Pf6N2E2_5655at 6466.524 kb on - strand, within Pf6N2E2_5655at 6466.524 kb on - strand, within Pf6N2E2_5655at 6466.524 kb on - strand, within Pf6N2E2_5655at 6466.562 kb on + strand, within Pf6N2E2_5655at 6466.562 kb on + strand, within Pf6N2E2_5655at 6466.562 kb on + strand, within Pf6N2E2_5655at 6466.562 kb on + strand, within Pf6N2E2_5655at 6466.563 kb on - strand, within Pf6N2E2_5655at 6466.563 kb on - strand, within Pf6N2E2_5655at 6466.569 kb on - strand, within Pf6N2E2_5655at 6466.583 kb on + strand, within Pf6N2E2_5655at 6466.583 kb on + strand, within Pf6N2E2_5655at 6466.583 kb on + strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.584 kb on - strand, within Pf6N2E2_5655at 6466.799 kb on + strandat 6466.799 kb on + strandat 6466.799 kb on + strandat 6466.800 kb on - strandat 6466.800 kb on - strandat 6466.800 kb on - strandat 6466.800 kb on - strandat 6466.800 kb on - strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.828 kb on + strandat 6466.829 kb on - strandat 6466.830 kb on + strandat 6466.830 kb on + strandat 6466.831 kb on - strandat 6466.831 kb on - strandat 6466.831 kb on - strandat 6466.831 kb on - strandat 6466.831 kb on - strandat 6466.861 kb on + strandat 6466.871 kb on + strandat 6466.871 kb on + strandat 6466.872 kb on - strandat 6466.872 kb on - strandat 6466.903 kb on + strandat 6466.903 kb on + strandat 6466.903 kb on + strandat 6466.903 kb on + strandat 6466.904 kb on - strandat 6466.912 kb on + strandat 6466.912 kb on + strandat 6466.912 kb on + strandat 6466.913 kb on - strandat 6466.913 kb on - strandat 6466.913 kb on - strandat 6466.913 kb on - strandat 6466.913 kb on - strandat 6466.913 kb on - strandat 6466.931 kb on + strandat 6466.939 kb on + strandat 6466.978 kb on + strandat 6466.978 kb on + strandat 6466.978 kb on + strandat 6466.978 kb on + strandat 6466.978 kb on + strandat 6466.979 kb on - strandat 6466.979 kb on - strandat 6466.979 kb on - strandat 6466.996 kb on + strandat 6466.996 kb on + strandat 6466.996 kb on + strandat 6466.997 kb on - strandat 6466.997 kb on - strandat 6466.999 kb on + strandat 6466.999 kb on + strandat 6467.000 kb on - strandat 6467.000 kb on - strandat 6467.000 kb on - strandat 6467.000 kb on - strandat 6467.000 kb on - strandat 6467.016 kb on - strandat 6467.029 kb on + strandat 6467.029 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.034 kb on + strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.035 kb on - strandat 6467.096 kb on - strandat 6467.169 kb on - strandat 6467.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.00005 M
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6,465,381 + Pf6N2E2_5654 0.33 -0.8
6,465,411 + Pf6N2E2_5654 0.36 -0.0
6,465,411 + Pf6N2E2_5654 0.36 -1.6
6,465,412 - Pf6N2E2_5654 0.36 +3.4
6,465,412 - Pf6N2E2_5654 0.36 +0.3
6,465,438 + Pf6N2E2_5654 0.39 +0.2
6,465,681 + Pf6N2E2_5654 0.63 -0.9
6,465,681 + Pf6N2E2_5654 0.63 -1.0
6,465,681 + Pf6N2E2_5654 0.63 +2.5
6,465,681 + Pf6N2E2_5654 0.63 +1.6
6,465,682 - Pf6N2E2_5654 0.63 -0.2
6,465,682 - Pf6N2E2_5654 0.63 -0.1
6,465,682 - Pf6N2E2_5654 0.63 -1.1
6,465,789 + Pf6N2E2_5654 0.74 +0.6
6,465,789 + Pf6N2E2_5654 0.74 +1.1
6,465,789 + Pf6N2E2_5654 0.74 -1.9
6,465,789 + Pf6N2E2_5654 0.74 -0.6
6,465,789 + Pf6N2E2_5654 0.74 -0.3
6,465,790 - Pf6N2E2_5654 0.74 -1.1
6,465,790 - Pf6N2E2_5654 0.74 -0.3
6,465,790 - Pf6N2E2_5654 0.74 -0.5
6,465,790 - Pf6N2E2_5654 0.74 +0.5
6,465,805 + Pf6N2E2_5654 0.76 -0.4
6,465,806 - Pf6N2E2_5654 0.76 -0.6
6,465,849 + Pf6N2E2_5654 0.80 -1.2
6,465,849 + Pf6N2E2_5654 0.80 +0.2
6,465,850 - Pf6N2E2_5654 0.80 +0.5
6,465,850 - Pf6N2E2_5654 0.80 +1.0
6,465,850 - Pf6N2E2_5654 0.80 +1.2
6,465,850 - Pf6N2E2_5654 0.80 +0.8
6,465,850 - Pf6N2E2_5654 0.80 -0.6
6,465,850 - Pf6N2E2_5654 0.80 -0.1
6,465,990 + -0.8
6,465,991 - -0.6
6,465,991 - -0.2
6,465,991 - +1.1
6,466,024 - -1.1
6,466,072 + -0.4
6,466,073 - -1.0
6,466,075 + -1.7
6,466,075 + -0.0
6,466,076 - +0.8
6,466,076 - +0.4
6,466,076 - +1.1
6,466,076 - +1.3
6,466,076 - +0.7
6,466,076 - +0.6
6,466,076 - +0.9
6,466,078 + +2.7
6,466,131 + +1.3
6,466,173 + +1.1
6,466,173 + +0.8
6,466,174 - +0.1
6,466,482 + Pf6N2E2_5655 0.40 +0.8
6,466,482 + Pf6N2E2_5655 0.40 -1.1
6,466,509 + Pf6N2E2_5655 0.46 +0.9
6,466,510 - Pf6N2E2_5655 0.46 +0.7
6,466,523 + Pf6N2E2_5655 0.49 -0.6
6,466,524 - Pf6N2E2_5655 0.49 +0.7
6,466,524 - Pf6N2E2_5655 0.49 +1.3
6,466,524 - Pf6N2E2_5655 0.49 +0.8
6,466,524 - Pf6N2E2_5655 0.49 +0.0
6,466,524 - Pf6N2E2_5655 0.49 -0.6
6,466,562 + Pf6N2E2_5655 0.58 -0.9
6,466,562 + Pf6N2E2_5655 0.58 +0.5
6,466,562 + Pf6N2E2_5655 0.58 +0.3
6,466,562 + Pf6N2E2_5655 0.58 -0.7
6,466,563 - Pf6N2E2_5655 0.58 -0.5
6,466,563 - Pf6N2E2_5655 0.58 +0.1
6,466,569 - Pf6N2E2_5655 0.59 -1.7
6,466,583 + Pf6N2E2_5655 0.62 +0.5
6,466,583 + Pf6N2E2_5655 0.62 +0.6
6,466,583 + Pf6N2E2_5655 0.62 +0.1
6,466,584 - Pf6N2E2_5655 0.62 -0.1
6,466,584 - Pf6N2E2_5655 0.62 +1.1
6,466,584 - Pf6N2E2_5655 0.62 -0.2
6,466,584 - Pf6N2E2_5655 0.62 -0.6
6,466,584 - Pf6N2E2_5655 0.62 -0.9
6,466,584 - Pf6N2E2_5655 0.62 +0.8
6,466,799 + -0.2
6,466,799 + +0.9
6,466,799 + -0.4
6,466,800 - -0.7
6,466,800 - +1.2
6,466,800 - -0.9
6,466,800 - +0.9
6,466,800 - -1.5
6,466,828 + +2.6
6,466,828 + -0.4
6,466,828 + -0.4
6,466,828 + +0.3
6,466,828 + +1.3
6,466,828 + +0.9
6,466,828 + -0.6
6,466,829 - -0.2
6,466,830 + +0.1
6,466,830 + +1.1
6,466,831 - -0.2
6,466,831 - -1.8
6,466,831 - -0.1
6,466,831 - +0.5
6,466,831 - +0.5
6,466,861 + +0.5
6,466,871 + +0.5
6,466,871 + -0.4
6,466,872 - -1.1
6,466,872 - -0.8
6,466,903 + -1.6
6,466,903 + -0.4
6,466,903 + -1.6
6,466,903 + -0.3
6,466,904 - +0.5
6,466,912 + +0.6
6,466,912 + +0.1
6,466,912 + +0.0
6,466,913 - -1.7
6,466,913 - +0.1
6,466,913 - -0.7
6,466,913 - -2.5
6,466,913 - +0.1
6,466,913 - +1.3
6,466,931 + -0.8
6,466,939 + +0.7
6,466,978 + +1.0
6,466,978 + -0.7
6,466,978 + -1.2
6,466,978 + +0.0
6,466,978 + -1.5
6,466,979 - -0.3
6,466,979 - -1.3
6,466,979 - +1.0
6,466,996 + +1.0
6,466,996 + -0.7
6,466,996 + +0.8
6,466,997 - +0.5
6,466,997 - +0.3
6,466,999 + +0.5
6,466,999 + +1.3
6,467,000 - +0.0
6,467,000 - -0.7
6,467,000 - +0.6
6,467,000 - +0.6
6,467,000 - -2.4
6,467,016 - +1.2
6,467,029 + -2.8
6,467,029 + -0.2
6,467,034 + -0.5
6,467,034 + +0.6
6,467,034 + -1.8
6,467,034 + -2.2
6,467,034 + +0.8
6,467,034 + -0.6
6,467,034 + -0.7
6,467,035 - -0.4
6,467,035 - -0.3
6,467,035 - +0.0
6,467,035 - +0.2
6,467,035 - -0.6
6,467,035 - +0.1
6,467,035 - -1.8
6,467,035 - -2.5
6,467,096 - +0.4
6,467,169 - -0.3
6,467,173 + +2.3

Or see this region's nucleotide sequence