Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_474 and Pf6N2E2_475 are separated by 76 nucleotides Pf6N2E2_475 and Pf6N2E2_476 are separated by 110 nucleotides Pf6N2E2_476 and Pf6N2E2_477 are separated by 175 nucleotides
Pf6N2E2_474 - Transcriptional regulator, ArsR family, at 539,355 to 540,110
_474
Pf6N2E2_475 - Transcriptional regulator, AraC family, at 540,187 to 540,981
_475
Pf6N2E2_476 - Permease of the drug/metabolite transporter (DMT) superfamily, at 541,092 to 542,021
_476
Pf6N2E2_477 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 542,197 to 543,216
_477
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.198 kb on + strand at 540.198 kb on + strand at 540.710 kb on + strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.800 kb on + strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.845 kb on + strand, within Pf6N2E2_475 at 540.882 kb on - strand, within Pf6N2E2_475 at 540.981 kb on + strand at 541.028 kb on + strand at 541.028 kb on + strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.051 kb on - strand at 541.373 kb on + strand, within Pf6N2E2_476 at 541.373 kb on + strand, within Pf6N2E2_476 at 541.405 kb on - strand, within Pf6N2E2_476 at 541.615 kb on + strand, within Pf6N2E2_476 at 541.616 kb on - strand, within Pf6N2E2_476 at 541.919 kb on + strand, within Pf6N2E2_476 at 542.019 kb on + strand at 542.264 kb on + strand at 542.327 kb on + strand, within Pf6N2E2_477 at 542.327 kb on + strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.652 kb on - strand, within Pf6N2E2_477 at 542.747 kb on + strand, within Pf6N2E2_477 at 542.843 kb on + strand, within Pf6N2E2_477
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 540,198 + +0.1 540,198 + +0.8 540,710 + Pf6N2E2_475 0.66 -0.6 540,711 - Pf6N2E2_475 0.66 -0.3 540,711 - Pf6N2E2_475 0.66 +1.1 540,800 + Pf6N2E2_475 0.77 -1.4 540,801 - Pf6N2E2_475 0.77 -0.6 540,801 - Pf6N2E2_475 0.77 -0.0 540,839 + Pf6N2E2_475 0.82 -0.7 540,839 + Pf6N2E2_475 0.82 +1.5 540,839 + Pf6N2E2_475 0.82 -0.2 540,840 - Pf6N2E2_475 0.82 +0.7 540,840 - Pf6N2E2_475 0.82 -0.5 540,840 - Pf6N2E2_475 0.82 -0.2 540,840 - Pf6N2E2_475 0.82 -1.2 540,840 - Pf6N2E2_475 0.82 +0.3 540,845 + Pf6N2E2_475 0.83 -0.3 540,882 - Pf6N2E2_475 0.87 -0.6 540,981 + +0.0 541,028 + -2.2 541,028 + +0.2 541,029 - -0.7 541,029 - +0.6 541,029 - +0.5 541,029 - +0.7 541,051 - -1.0 541,373 + Pf6N2E2_476 0.30 +2.6 541,373 + Pf6N2E2_476 0.30 +1.2 541,405 - Pf6N2E2_476 0.34 +0.3 541,615 + Pf6N2E2_476 0.56 +1.2 541,616 - Pf6N2E2_476 0.56 -0.6 541,919 + Pf6N2E2_476 0.89 -0.8 542,019 + +1.4 542,264 + +0.1 542,327 + Pf6N2E2_477 0.13 +0.0 542,327 + Pf6N2E2_477 0.13 +0.7 542,328 - Pf6N2E2_477 0.13 +0.1 542,328 - Pf6N2E2_477 0.13 +3.3 542,328 - Pf6N2E2_477 0.13 -0.2 542,652 - Pf6N2E2_477 0.45 -1.4 542,747 + Pf6N2E2_477 0.54 +1.2 542,843 + Pf6N2E2_477 0.63 -0.8
Or see this region's nucleotide sequence