Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3843

Experiment: Chlorite 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3841 and Pf6N2E2_3842 overlap by 1 nucleotidesPf6N2E2_3842 and Pf6N2E2_3843 are separated by 281 nucleotidesPf6N2E2_3843 and Pf6N2E2_3844 are separated by 261 nucleotidesPf6N2E2_3844 and Pf6N2E2_3845 are separated by 270 nucleotides Pf6N2E2_3841 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 4,473,204 to 4,473,842 _3841 Pf6N2E2_3842 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 4,473,842 to 4,474,435 _3842 Pf6N2E2_3843 - MFS permease, at 4,474,717 to 4,476,378 _3843 Pf6N2E2_3844 - hypothetical protein, at 4,476,640 to 4,477,038 _3844 Pf6N2E2_3845 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 4,477,309 to 4,479,540 _3845 Position (kb) 4474 4475 4476 4477Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 4473.844 kb on - strandat 4473.859 kb on + strandat 4473.859 kb on + strandat 4473.860 kb on - strandat 4473.860 kb on - strandat 4473.860 kb on - strandat 4474.068 kb on + strand, within Pf6N2E2_3842at 4474.068 kb on + strand, within Pf6N2E2_3842at 4474.146 kb on + strand, within Pf6N2E2_3842at 4474.146 kb on + strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.147 kb on - strand, within Pf6N2E2_3842at 4474.216 kb on + strand, within Pf6N2E2_3842at 4474.423 kb on + strandat 4474.423 kb on + strandat 4474.424 kb on - strandat 4474.424 kb on - strandat 4474.424 kb on - strandat 4474.477 kb on - strandat 4474.478 kb on + strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.479 kb on - strandat 4474.550 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.562 kb on + strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.563 kb on - strandat 4474.718 kb on + strandat 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.913 kb on + strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.914 kb on - strand, within Pf6N2E2_3843at 4474.980 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.982 kb on + strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.983 kb on - strand, within Pf6N2E2_3843at 4474.997 kb on + strand, within Pf6N2E2_3843at 4474.997 kb on + strand, within Pf6N2E2_3843at 4475.034 kb on - strand, within Pf6N2E2_3843at 4475.034 kb on - strand, within Pf6N2E2_3843at 4475.045 kb on + strand, within Pf6N2E2_3843at 4475.046 kb on - strand, within Pf6N2E2_3843at 4475.177 kb on + strand, within Pf6N2E2_3843at 4475.178 kb on - strand, within Pf6N2E2_3843at 4475.256 kb on - strand, within Pf6N2E2_3843at 4475.256 kb on - strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.288 kb on + strand, within Pf6N2E2_3843at 4475.309 kb on + strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843at 4475.310 kb on - strand, within Pf6N2E2_3843at 4475.512 kb on + strand, within Pf6N2E2_3843at 4475.513 kb on - strand, within Pf6N2E2_3843at 4475.513 kb on - strand, within Pf6N2E2_3843at 4475.513 kb on - strand, within Pf6N2E2_3843at 4475.536 kb on + strand, within Pf6N2E2_3843at 4475.537 kb on - strand, within Pf6N2E2_3843at 4475.537 kb on - strand, within Pf6N2E2_3843at 4475.699 kb on + strand, within Pf6N2E2_3843at 4475.699 kb on + strand, within Pf6N2E2_3843at 4475.699 kb on + strand, within Pf6N2E2_3843at 4475.699 kb on + strand, within Pf6N2E2_3843at 4475.700 kb on - strand, within Pf6N2E2_3843at 4475.700 kb on - strand, within Pf6N2E2_3843at 4475.700 kb on - strand, within Pf6N2E2_3843at 4475.732 kb on - strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.886 kb on + strand, within Pf6N2E2_3843at 4475.887 kb on - strand, within Pf6N2E2_3843at 4475.887 kb on - strand, within Pf6N2E2_3843at 4475.887 kb on - strand, within Pf6N2E2_3843at 4475.887 kb on - strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.888 kb on + strand, within Pf6N2E2_3843at 4475.889 kb on - strand, within Pf6N2E2_3843at 4475.889 kb on - strand, within Pf6N2E2_3843at 4475.889 kb on - strand, within Pf6N2E2_3843at 4475.956 kb on - strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.957 kb on + strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.958 kb on - strand, within Pf6N2E2_3843at 4475.961 kb on + strand, within Pf6N2E2_3843at 4475.962 kb on - strand, within Pf6N2E2_3843at 4475.962 kb on - strand, within Pf6N2E2_3843at 4476.008 kb on - strand, within Pf6N2E2_3843at 4476.095 kb on + strand, within Pf6N2E2_3843at 4476.096 kb on - strand, within Pf6N2E2_3843at 4476.096 kb on - strand, within Pf6N2E2_3843at 4476.162 kb on + strand, within Pf6N2E2_3843at 4476.163 kb on - strand, within Pf6N2E2_3843at 4476.236 kb on + strandat 4476.383 kb on + strandat 4476.395 kb on - strandat 4476.455 kb on + strandat 4476.456 kb on - strandat 4476.456 kb on - strandat 4476.476 kb on - strandat 4476.522 kb on + strandat 4476.555 kb on + strandat 4476.742 kb on - strand, within Pf6N2E2_3844at 4476.875 kb on + strand, within Pf6N2E2_3844at 4476.875 kb on + strand, within Pf6N2E2_3844at 4477.036 kb on + strandat 4477.036 kb on + strandat 4477.037 kb on - strandat 4477.037 kb on - strandat 4477.037 kb on - strandat 4477.037 kb on - strandat 4477.037 kb on - strandat 4477.040 kb on + strandat 4477.041 kb on - strandat 4477.041 kb on - strandat 4477.251 kb on + strandat 4477.251 kb on + strandat 4477.252 kb on - strandat 4477.264 kb on + strandat 4477.266 kb on + strandat 4477.267 kb on - strandat 4477.267 kb on - strandat 4477.267 kb on - strandat 4477.294 kb on + strandat 4477.294 kb on + strandat 4477.294 kb on + strandat 4477.294 kb on + strandat 4477.294 kb on + strandat 4477.295 kb on - strandat 4477.295 kb on - strandat 4477.295 kb on - strandat 4477.340 kb on + strandat 4477.340 kb on + strandat 4477.341 kb on - strandat 4477.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.00005 M
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4,473,844 - -0.4
4,473,859 + -1.2
4,473,859 + -0.9
4,473,860 - -2.7
4,473,860 - -1.2
4,473,860 - -2.6
4,474,068 + Pf6N2E2_3842 0.38 -1.2
4,474,068 + Pf6N2E2_3842 0.38 -1.7
4,474,146 + Pf6N2E2_3842 0.51 +0.1
4,474,146 + Pf6N2E2_3842 0.51 -0.9
4,474,147 - Pf6N2E2_3842 0.51 -2.3
4,474,147 - Pf6N2E2_3842 0.51 +0.6
4,474,147 - Pf6N2E2_3842 0.51 -1.3
4,474,216 + Pf6N2E2_3842 0.63 -1.7
4,474,423 + +0.8
4,474,423 + +1.8
4,474,424 - -0.2
4,474,424 - -1.5
4,474,424 - -2.3
4,474,477 - +0.3
4,474,478 + -2.3
4,474,479 - +0.2
4,474,479 - +0.6
4,474,479 - -2.0
4,474,479 - +0.7
4,474,479 - +0.7
4,474,479 - +0.6
4,474,550 + +0.8
4,474,562 + +0.7
4,474,562 + +1.0
4,474,562 + +0.5
4,474,562 + -0.2
4,474,562 + +1.0
4,474,562 + +0.5
4,474,562 + +0.6
4,474,563 - -0.9
4,474,563 - +1.0
4,474,563 - -1.6
4,474,563 - +0.6
4,474,563 - -0.6
4,474,563 - -0.5
4,474,563 - +1.1
4,474,718 + +6.9
4,474,913 + Pf6N2E2_3843 0.12 +10.3
4,474,913 + Pf6N2E2_3843 0.12 +10.2
4,474,913 + Pf6N2E2_3843 0.12 +9.5
4,474,913 + Pf6N2E2_3843 0.12 +9.0
4,474,913 + Pf6N2E2_3843 0.12 +9.9
4,474,914 - Pf6N2E2_3843 0.12 +9.7
4,474,914 - Pf6N2E2_3843 0.12 +10.3
4,474,914 - Pf6N2E2_3843 0.12 +9.2
4,474,914 - Pf6N2E2_3843 0.12 +9.9
4,474,914 - Pf6N2E2_3843 0.12 +9.8
4,474,980 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +10.0
4,474,982 + Pf6N2E2_3843 0.16 +9.6
4,474,982 + Pf6N2E2_3843 0.16 +9.7
4,474,982 + Pf6N2E2_3843 0.16 +10.4
4,474,982 + Pf6N2E2_3843 0.16 +9.3
4,474,982 + Pf6N2E2_3843 0.16 +9.2
4,474,982 + Pf6N2E2_3843 0.16 +9.4
4,474,982 + Pf6N2E2_3843 0.16 +10.6
4,474,982 + Pf6N2E2_3843 0.16 +9.8
4,474,982 + Pf6N2E2_3843 0.16 +8.6
4,474,982 + Pf6N2E2_3843 0.16 +10.3
4,474,982 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +9.8
4,474,982 + Pf6N2E2_3843 0.16 +9.9
4,474,982 + Pf6N2E2_3843 0.16 +9.6
4,474,983 - Pf6N2E2_3843 0.16 +9.9
4,474,983 - Pf6N2E2_3843 0.16 +10.2
4,474,983 - Pf6N2E2_3843 0.16 +9.5
4,474,983 - Pf6N2E2_3843 0.16 +9.3
4,474,983 - Pf6N2E2_3843 0.16 +8.9
4,474,983 - Pf6N2E2_3843 0.16 +9.7
4,474,983 - Pf6N2E2_3843 0.16 +9.7
4,474,983 - Pf6N2E2_3843 0.16 +10.1
4,474,983 - Pf6N2E2_3843 0.16 +9.9
4,474,983 - Pf6N2E2_3843 0.16 +9.9
4,474,983 - Pf6N2E2_3843 0.16 +9.7
4,474,983 - Pf6N2E2_3843 0.16 +9.2
4,474,983 - Pf6N2E2_3843 0.16 +9.5
4,474,983 - Pf6N2E2_3843 0.16 +9.1
4,474,983 - Pf6N2E2_3843 0.16 +9.6
4,474,983 - Pf6N2E2_3843 0.16 +10.5
4,474,983 - Pf6N2E2_3843 0.16 +9.0
4,474,983 - Pf6N2E2_3843 0.16 +9.8
4,474,997 + Pf6N2E2_3843 0.17 +10.1
4,474,997 + Pf6N2E2_3843 0.17 +9.8
4,475,034 - Pf6N2E2_3843 0.19 +8.5
4,475,034 - Pf6N2E2_3843 0.19 +10.2
4,475,045 + Pf6N2E2_3843 0.20 +10.4
4,475,046 - Pf6N2E2_3843 0.20 +9.7
4,475,177 + Pf6N2E2_3843 0.28 +9.9
4,475,178 - Pf6N2E2_3843 0.28 +9.8
4,475,256 - Pf6N2E2_3843 0.32 +9.8
4,475,256 - Pf6N2E2_3843 0.32 +9.0
4,475,288 + Pf6N2E2_3843 0.34 +10.1
4,475,288 + Pf6N2E2_3843 0.34 +9.5
4,475,288 + Pf6N2E2_3843 0.34 +8.9
4,475,309 + Pf6N2E2_3843 0.36 +9.9
4,475,310 - Pf6N2E2_3843 0.36 +9.6
4,475,310 - Pf6N2E2_3843 0.36 +9.8
4,475,310 - Pf6N2E2_3843 0.36 +9.8
4,475,512 + Pf6N2E2_3843 0.48 +9.5
4,475,513 - Pf6N2E2_3843 0.48 +9.7
4,475,513 - Pf6N2E2_3843 0.48 +10.3
4,475,513 - Pf6N2E2_3843 0.48 +9.6
4,475,536 + Pf6N2E2_3843 0.49 +9.7
4,475,537 - Pf6N2E2_3843 0.49 +10.5
4,475,537 - Pf6N2E2_3843 0.49 +8.9
4,475,699 + Pf6N2E2_3843 0.59 +9.7
4,475,699 + Pf6N2E2_3843 0.59 +9.8
4,475,699 + Pf6N2E2_3843 0.59 +9.6
4,475,699 + Pf6N2E2_3843 0.59 +9.9
4,475,700 - Pf6N2E2_3843 0.59 +9.2
4,475,700 - Pf6N2E2_3843 0.59 +10.0
4,475,700 - Pf6N2E2_3843 0.59 +10.1
4,475,732 - Pf6N2E2_3843 0.61 +10.2
4,475,886 + Pf6N2E2_3843 0.70 +9.6
4,475,886 + Pf6N2E2_3843 0.70 +9.4
4,475,886 + Pf6N2E2_3843 0.70 +8.9
4,475,886 + Pf6N2E2_3843 0.70 +9.4
4,475,886 + Pf6N2E2_3843 0.70 +9.4
4,475,886 + Pf6N2E2_3843 0.70 +9.7
4,475,887 - Pf6N2E2_3843 0.70 +9.5
4,475,887 - Pf6N2E2_3843 0.70 +9.3
4,475,887 - Pf6N2E2_3843 0.70 +10.1
4,475,887 - Pf6N2E2_3843 0.70 +9.7
4,475,888 + Pf6N2E2_3843 0.70 +10.1
4,475,888 + Pf6N2E2_3843 0.70 +9.6
4,475,888 + Pf6N2E2_3843 0.70 +10.0
4,475,888 + Pf6N2E2_3843 0.70 +10.3
4,475,888 + Pf6N2E2_3843 0.70 +9.5
4,475,888 + Pf6N2E2_3843 0.70 +9.5
4,475,888 + Pf6N2E2_3843 0.70 +9.7
4,475,889 - Pf6N2E2_3843 0.71 +9.9
4,475,889 - Pf6N2E2_3843 0.71 +10.1
4,475,889 - Pf6N2E2_3843 0.71 +9.4
4,475,956 - Pf6N2E2_3843 0.75 +11.8
4,475,957 + Pf6N2E2_3843 0.75 +9.9
4,475,957 + Pf6N2E2_3843 0.75 +9.5
4,475,957 + Pf6N2E2_3843 0.75 +9.9
4,475,957 + Pf6N2E2_3843 0.75 +9.7
4,475,957 + Pf6N2E2_3843 0.75 +9.9
4,475,957 + Pf6N2E2_3843 0.75 +9.6
4,475,957 + Pf6N2E2_3843 0.75 +10.1
4,475,957 + Pf6N2E2_3843 0.75 +9.5
4,475,957 + Pf6N2E2_3843 0.75 +9.6
4,475,958 - Pf6N2E2_3843 0.75 +10.0
4,475,958 - Pf6N2E2_3843 0.75 +9.3
4,475,958 - Pf6N2E2_3843 0.75 +9.5
4,475,958 - Pf6N2E2_3843 0.75 +10.4
4,475,958 - Pf6N2E2_3843 0.75 +9.3
4,475,958 - Pf6N2E2_3843 0.75 +9.5
4,475,958 - Pf6N2E2_3843 0.75 +10.5
4,475,958 - Pf6N2E2_3843 0.75 +9.4
4,475,958 - Pf6N2E2_3843 0.75 +9.4
4,475,958 - Pf6N2E2_3843 0.75 +9.8
4,475,958 - Pf6N2E2_3843 0.75 +10.4
4,475,961 + Pf6N2E2_3843 0.75 +9.2
4,475,962 - Pf6N2E2_3843 0.75 +10.0
4,475,962 - Pf6N2E2_3843 0.75 +9.4
4,476,008 - Pf6N2E2_3843 0.78 +9.3
4,476,095 + Pf6N2E2_3843 0.83 +8.6
4,476,096 - Pf6N2E2_3843 0.83 +9.6
4,476,096 - Pf6N2E2_3843 0.83 +9.7
4,476,162 + Pf6N2E2_3843 0.87 +10.5
4,476,163 - Pf6N2E2_3843 0.87 +9.5
4,476,236 + +9.8
4,476,383 + +9.7
4,476,395 - -1.2
4,476,455 + +1.1
4,476,456 - -0.5
4,476,456 - -0.9
4,476,476 - -2.3
4,476,522 + +2.8
4,476,555 + +1.9
4,476,742 - Pf6N2E2_3844 0.26 -0.0
4,476,875 + Pf6N2E2_3844 0.59 +1.8
4,476,875 + Pf6N2E2_3844 0.59 -0.0
4,477,036 + +1.1
4,477,036 + +0.2
4,477,037 - -0.9
4,477,037 - -2.4
4,477,037 - -0.9
4,477,037 - -1.1
4,477,037 - -0.5
4,477,040 + -0.8
4,477,041 - -2.1
4,477,041 - -2.2
4,477,251 + -0.6
4,477,251 + +0.5
4,477,252 - -0.9
4,477,264 + +0.1
4,477,266 + +0.7
4,477,267 - -1.6
4,477,267 - -1.5
4,477,267 - -2.2
4,477,294 + -0.5
4,477,294 + +0.1
4,477,294 + -0.1
4,477,294 + +0.1
4,477,294 + +0.5
4,477,295 - -1.7
4,477,295 - -1.3
4,477,295 - -1.3
4,477,340 + -0.5
4,477,340 + +1.6
4,477,341 - -0.1
4,477,341 - -1.6

Or see this region's nucleotide sequence