Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3643 and Pf6N2E2_3644 are separated by 213 nucleotides Pf6N2E2_3644 and Pf6N2E2_3645 are separated by 435 nucleotides
Pf6N2E2_3643 - Predicted hydroxymethylpyrimidine transporter CytX, at 4,242,004 to 4,243,296
_3643
Pf6N2E2_3644 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 4,243,510 to 4,245,399
_3644
Pf6N2E2_3645 - Type I secretion outer membrane protein, TolC precursor, at 4,245,835 to 4,247,274
_3645
Position (kb)
4243
4244
4245
4246 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4242.522 kb on - strand, within Pf6N2E2_3643 at 4242.760 kb on - strand, within Pf6N2E2_3643 at 4242.760 kb on - strand, within Pf6N2E2_3643 at 4242.760 kb on - strand, within Pf6N2E2_3643 at 4243.274 kb on + strand at 4243.274 kb on + strand at 4243.274 kb on + strand at 4243.275 kb on - strand at 4243.275 kb on - strand at 4243.275 kb on - strand at 4243.275 kb on - strand at 4243.275 kb on - strand at 4243.387 kb on + strand at 4243.523 kb on + strand at 4243.523 kb on + strand at 4243.524 kb on - strand at 4243.524 kb on - strand at 4243.725 kb on - strand, within Pf6N2E2_3644 at 4243.725 kb on - strand, within Pf6N2E2_3644 at 4243.868 kb on + strand, within Pf6N2E2_3644 at 4243.868 kb on + strand, within Pf6N2E2_3644 at 4243.869 kb on - strand, within Pf6N2E2_3644 at 4243.869 kb on - strand, within Pf6N2E2_3644 at 4243.869 kb on - strand, within Pf6N2E2_3644 at 4243.869 kb on - strand, within Pf6N2E2_3644 at 4243.869 kb on - strand, within Pf6N2E2_3644 at 4243.934 kb on + strand, within Pf6N2E2_3644 at 4244.039 kb on + strand, within Pf6N2E2_3644 at 4244.040 kb on - strand, within Pf6N2E2_3644 at 4244.040 kb on - strand, within Pf6N2E2_3644 at 4244.262 kb on - strand, within Pf6N2E2_3644 at 4244.300 kb on + strand, within Pf6N2E2_3644 at 4244.300 kb on + strand, within Pf6N2E2_3644 at 4244.301 kb on - strand, within Pf6N2E2_3644 at 4244.301 kb on - strand, within Pf6N2E2_3644 at 4244.301 kb on - strand, within Pf6N2E2_3644 at 4244.399 kb on + strand, within Pf6N2E2_3644 at 4244.399 kb on + strand, within Pf6N2E2_3644 at 4244.400 kb on - strand, within Pf6N2E2_3644 at 4244.400 kb on - strand, within Pf6N2E2_3644 at 4244.930 kb on + strand, within Pf6N2E2_3644 at 4244.931 kb on - strand, within Pf6N2E2_3644 at 4244.931 kb on - strand, within Pf6N2E2_3644 at 4244.931 kb on - strand, within Pf6N2E2_3644 at 4244.931 kb on - strand, within Pf6N2E2_3644 at 4244.966 kb on + strand, within Pf6N2E2_3644 at 4244.966 kb on + strand, within Pf6N2E2_3644 at 4244.967 kb on - strand, within Pf6N2E2_3644 at 4245.200 kb on + strand, within Pf6N2E2_3644 at 4245.201 kb on - strand, within Pf6N2E2_3644 at 4245.656 kb on + strand at 4245.656 kb on + strand at 4245.656 kb on + strand at 4245.657 kb on - strand at 4245.657 kb on - strand at 4245.657 kb on - strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.746 kb on + strand at 4245.747 kb on - strand at 4245.747 kb on - strand at 4245.747 kb on - strand at 4245.748 kb on + strand at 4245.748 kb on + strand at 4245.748 kb on + strand at 4245.748 kb on + strand at 4245.748 kb on + strand at 4245.749 kb on - strand at 4245.749 kb on - strand at 4245.749 kb on - strand at 4245.749 kb on - strand at 4245.749 kb on - strand at 4245.778 kb on + strand at 4245.779 kb on - strand at 4245.779 kb on - strand at 4245.822 kb on + strand at 4245.822 kb on + strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.823 kb on - strand at 4245.940 kb on + strand at 4245.940 kb on + strand at 4245.940 kb on + strand at 4246.126 kb on + strand, within Pf6N2E2_3645
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 4,242,522 - Pf6N2E2_3643 0.40 +0.2 4,242,760 - Pf6N2E2_3643 0.58 +0.5 4,242,760 - Pf6N2E2_3643 0.58 -0.5 4,242,760 - Pf6N2E2_3643 0.58 +1.5 4,243,274 + -0.1 4,243,274 + +0.3 4,243,274 + -0.9 4,243,275 - -0.0 4,243,275 - -0.1 4,243,275 - +0.3 4,243,275 - -0.9 4,243,275 - -0.9 4,243,387 + +0.1 4,243,523 + +0.8 4,243,523 + +0.1 4,243,524 - -1.7 4,243,524 - -0.8 4,243,725 - Pf6N2E2_3644 0.11 +0.6 4,243,725 - Pf6N2E2_3644 0.11 +0.3 4,243,868 + Pf6N2E2_3644 0.19 +0.5 4,243,868 + Pf6N2E2_3644 0.19 +0.6 4,243,869 - Pf6N2E2_3644 0.19 -0.8 4,243,869 - Pf6N2E2_3644 0.19 -0.2 4,243,869 - Pf6N2E2_3644 0.19 -0.0 4,243,869 - Pf6N2E2_3644 0.19 -0.7 4,243,869 - Pf6N2E2_3644 0.19 +0.1 4,243,934 + Pf6N2E2_3644 0.22 -0.4 4,244,039 + Pf6N2E2_3644 0.28 +0.4 4,244,040 - Pf6N2E2_3644 0.28 -1.2 4,244,040 - Pf6N2E2_3644 0.28 +0.1 4,244,262 - Pf6N2E2_3644 0.40 +0.5 4,244,300 + Pf6N2E2_3644 0.42 -1.5 4,244,300 + Pf6N2E2_3644 0.42 -1.6 4,244,301 - Pf6N2E2_3644 0.42 +0.7 4,244,301 - Pf6N2E2_3644 0.42 -1.0 4,244,301 - Pf6N2E2_3644 0.42 +0.2 4,244,399 + Pf6N2E2_3644 0.47 -0.6 4,244,399 + Pf6N2E2_3644 0.47 -0.0 4,244,400 - Pf6N2E2_3644 0.47 -0.7 4,244,400 - Pf6N2E2_3644 0.47 +0.8 4,244,930 + Pf6N2E2_3644 0.75 +1.1 4,244,931 - Pf6N2E2_3644 0.75 -0.4 4,244,931 - Pf6N2E2_3644 0.75 +0.2 4,244,931 - Pf6N2E2_3644 0.75 -0.9 4,244,931 - Pf6N2E2_3644 0.75 +0.0 4,244,966 + Pf6N2E2_3644 0.77 -0.2 4,244,966 + Pf6N2E2_3644 0.77 +0.2 4,244,967 - Pf6N2E2_3644 0.77 +1.5 4,245,200 + Pf6N2E2_3644 0.89 -0.6 4,245,201 - Pf6N2E2_3644 0.89 +0.3 4,245,656 + +1.0 4,245,656 + -0.3 4,245,656 + -0.6 4,245,657 - +0.2 4,245,657 - +0.4 4,245,657 - +0.6 4,245,746 + +0.4 4,245,746 + -0.2 4,245,746 + -0.8 4,245,746 + -1.4 4,245,746 + +0.3 4,245,746 + -1.0 4,245,746 + +0.0 4,245,747 - -0.2 4,245,747 - +0.4 4,245,747 - +0.0 4,245,748 + +0.8 4,245,748 + +0.4 4,245,748 + +0.5 4,245,748 + -0.2 4,245,748 + +0.5 4,245,749 - -0.3 4,245,749 - -0.6 4,245,749 - +0.2 4,245,749 - +0.4 4,245,749 - +0.4 4,245,778 + +0.7 4,245,779 - +0.4 4,245,779 - +1.0 4,245,822 + +0.6 4,245,822 + +0.1 4,245,823 - +1.9 4,245,823 - +0.4 4,245,823 - -0.2 4,245,823 - +1.1 4,245,823 - -0.9 4,245,823 - -2.5 4,245,823 - -0.1 4,245,823 - -1.9 4,245,940 + -1.1 4,245,940 + -0.5 4,245,940 + -1.5 4,246,126 + Pf6N2E2_3645 0.20 +0.2
Or see this region's nucleotide sequence