Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3360 and Pf6N2E2_3361 are separated by 106 nucleotides Pf6N2E2_3361 and Pf6N2E2_3362 are separated by 10 nucleotides Pf6N2E2_3362 and Pf6N2E2_3363 are separated by 28 nucleotides Pf6N2E2_3363 and Pf6N2E2_3364 overlap by 4 nucleotides
Pf6N2E2_3360 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 3,891,748 to 3,892,398
_3360
Pf6N2E2_3361 - FIG004454: RNA binding protein, at 3,892,505 to 3,892,813
_3361
Pf6N2E2_3362 - hypothetical protein, at 3,892,824 to 3,893,228
_3362
Pf6N2E2_3363 - Transcription elongation factor GreA, at 3,893,257 to 3,893,739
_3363
Pf6N2E2_3364 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 3,893,736 to 3,896,957
_3364
Position (kb)
3892
3893
3894 Strain fitness (log2 ratio)
-2
-1
0
1 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.421 kb on - strand, within Pf6N2E2_3363 at 3893.758 kb on - strand at 3893.758 kb on - strand at 3893.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 3,892,910 - Pf6N2E2_3362 0.21 -0.5 3,892,910 - Pf6N2E2_3362 0.21 -0.5 3,893,020 - Pf6N2E2_3362 0.48 -0.7 3,893,020 - Pf6N2E2_3362 0.48 -1.7 3,893,020 - Pf6N2E2_3362 0.48 -1.5 3,893,020 - Pf6N2E2_3362 0.48 +0.1 3,893,020 - Pf6N2E2_3362 0.48 -1.3 3,893,421 - Pf6N2E2_3363 0.34 -2.3 3,893,758 - +0.9 3,893,758 - -1.8 3,893,758 - -1.6
Or see this region's nucleotide sequence