Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3181 and Pf6N2E2_3182 are separated by 28 nucleotides Pf6N2E2_3182 and Pf6N2E2_3183 are separated by 88 nucleotides Pf6N2E2_3183 and Pf6N2E2_3184 are separated by 13 nucleotides Pf6N2E2_3184 and Pf6N2E2_3185 are separated by 3 nucleotides
Pf6N2E2_3181 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 3,677,355 to 3,678,503
_3181
Pf6N2E2_3182 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 3,678,532 to 3,678,957
_3182
Pf6N2E2_3183 - Believed to be involved in assembly of Fe-S clusters, at 3,679,046 to 3,679,246
_3183
Pf6N2E2_3184 - Ferredoxin, 2Fe-2S, at 3,679,260 to 3,679,601
_3184
Pf6N2E2_3185 - Chaperone protein HscA, at 3,679,605 to 3,681,467
_3185
Position (kb)
3678
3679 Strain fitness (log2 ratio)
-2
-1
0
1 at 3677.741 kb on - strand, within Pf6N2E2_3181 at 3678.522 kb on - strand at 3678.522 kb on - strand at 3678.522 kb on - strand at 3678.522 kb on - strand at 3678.545 kb on - strand at 3678.553 kb on - strand at 3679.006 kb on - strand at 3679.006 kb on - strand at 3679.008 kb on - strand at 3679.224 kb on - strand, within Pf6N2E2_3183 at 3679.224 kb on - strand, within Pf6N2E2_3183 at 3679.224 kb on - strand, within Pf6N2E2_3183 at 3679.224 kb on - strand, within Pf6N2E2_3183 at 3679.239 kb on + strand at 3679.240 kb on - strand at 3679.240 kb on - strand at 3679.240 kb on - strand at 3679.240 kb on - strand at 3679.240 kb on - strand at 3679.240 kb on - strand at 3679.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 3,677,741 - Pf6N2E2_3181 0.34 -1.1 3,678,522 - +0.9 3,678,522 - -0.4 3,678,522 - -0.1 3,678,522 - +0.2 3,678,545 - +0.1 3,678,553 - +0.5 3,679,006 - +0.2 3,679,006 - +0.1 3,679,008 - -0.1 3,679,224 - Pf6N2E2_3183 0.89 +1.2 3,679,224 - Pf6N2E2_3183 0.89 -0.7 3,679,224 - Pf6N2E2_3183 0.89 -0.7 3,679,224 - Pf6N2E2_3183 0.89 -1.8 3,679,239 + -1.3 3,679,240 - -0.5 3,679,240 - -0.4 3,679,240 - +0.9 3,679,240 - -0.0 3,679,240 - +0.8 3,679,240 - +1.2 3,679,240 - -0.3
Or see this region's nucleotide sequence