Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2690 and Pf6N2E2_2691 are separated by 222 nucleotides Pf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotides Pf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotides
Pf6N2E2_2690 - Pyrophosphate-specific outer membrane porin OprO, at 3,179,586 to 3,180,896
_2690
Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355
_2691
Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960
_2692
Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274
_2693
Position (kb)
3181
3182 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3180.415 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.526 kb on + strand, within Pf6N2E2_2690 at 3180.527 kb on - strand, within Pf6N2E2_2690 at 3180.550 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.589 kb on + strand, within Pf6N2E2_2690 at 3180.590 kb on - strand, within Pf6N2E2_2690 at 3180.590 kb on - strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.601 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.655 kb on + strand, within Pf6N2E2_2690 at 3180.656 kb on - strand, within Pf6N2E2_2690 at 3180.656 kb on - strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.688 kb on + strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.689 kb on - strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.692 kb on + strand, within Pf6N2E2_2690 at 3180.693 kb on - strand, within Pf6N2E2_2690 at 3180.693 kb on - strand, within Pf6N2E2_2690 at 3180.709 kb on + strand, within Pf6N2E2_2690 at 3180.709 kb on + strand, within Pf6N2E2_2690 at 3180.710 kb on - strand, within Pf6N2E2_2690 at 3180.710 kb on - strand, within Pf6N2E2_2690 at 3180.916 kb on + strand at 3180.921 kb on + strand at 3180.921 kb on + strand at 3180.922 kb on - strand at 3180.922 kb on - strand at 3181.017 kb on + strand at 3181.035 kb on + strand at 3181.112 kb on + strand at 3181.112 kb on + strand at 3181.113 kb on - strand at 3181.136 kb on + strand at 3181.315 kb on + strand, within Pf6N2E2_2691 at 3181.441 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.851 kb on + strand, within Pf6N2E2_2692 at 3181.852 kb on - strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.898 kb on - strand, within Pf6N2E2_2692 at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3182.112 kb on - strand at 3182.162 kb on - strand at 3182.244 kb on + strand at 3182.245 kb on - strand at 3182.245 kb on - strand at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3182.881 kb on - strand, within Pf6N2E2_2693
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 3,180,415 + Pf6N2E2_2690 0.63 -0.2 3,180,526 + Pf6N2E2_2690 0.72 -2.5 3,180,526 + Pf6N2E2_2690 0.72 -0.6 3,180,526 + Pf6N2E2_2690 0.72 +0.5 3,180,527 - Pf6N2E2_2690 0.72 +0.6 3,180,550 + Pf6N2E2_2690 0.74 -1.6 3,180,589 + Pf6N2E2_2690 0.77 -1.1 3,180,589 + Pf6N2E2_2690 0.77 +0.8 3,180,589 + Pf6N2E2_2690 0.77 +0.6 3,180,589 + Pf6N2E2_2690 0.77 -0.8 3,180,590 - Pf6N2E2_2690 0.77 -0.1 3,180,590 - Pf6N2E2_2690 0.77 +0.1 3,180,601 + Pf6N2E2_2690 0.77 +0.4 3,180,601 + Pf6N2E2_2690 0.77 -0.9 3,180,601 + Pf6N2E2_2690 0.77 -0.5 3,180,655 + Pf6N2E2_2690 0.82 -2.8 3,180,655 + Pf6N2E2_2690 0.82 -0.2 3,180,655 + Pf6N2E2_2690 0.82 -2.4 3,180,655 + Pf6N2E2_2690 0.82 -1.0 3,180,656 - Pf6N2E2_2690 0.82 +2.6 3,180,656 - Pf6N2E2_2690 0.82 -0.6 3,180,688 + Pf6N2E2_2690 0.84 +0.3 3,180,688 + Pf6N2E2_2690 0.84 -0.8 3,180,688 + Pf6N2E2_2690 0.84 -2.0 3,180,688 + Pf6N2E2_2690 0.84 -0.9 3,180,688 + Pf6N2E2_2690 0.84 +0.7 3,180,688 + Pf6N2E2_2690 0.84 -0.3 3,180,688 + Pf6N2E2_2690 0.84 -0.8 3,180,689 - Pf6N2E2_2690 0.84 -1.8 3,180,689 - Pf6N2E2_2690 0.84 +1.0 3,180,689 - Pf6N2E2_2690 0.84 +0.0 3,180,689 - Pf6N2E2_2690 0.84 -1.8 3,180,692 + Pf6N2E2_2690 0.84 +0.3 3,180,692 + Pf6N2E2_2690 0.84 -0.2 3,180,692 + Pf6N2E2_2690 0.84 -0.7 3,180,693 - Pf6N2E2_2690 0.84 -0.9 3,180,693 - Pf6N2E2_2690 0.84 +0.2 3,180,709 + Pf6N2E2_2690 0.86 -1.2 3,180,709 + Pf6N2E2_2690 0.86 -0.0 3,180,710 - Pf6N2E2_2690 0.86 -0.5 3,180,710 - Pf6N2E2_2690 0.86 -2.1 3,180,916 + +0.9 3,180,921 + +0.1 3,180,921 + +0.1 3,180,922 - +1.8 3,180,922 - +0.4 3,181,017 + -2.8 3,181,035 + -1.3 3,181,112 + -0.0 3,181,112 + +1.2 3,181,113 - +1.6 3,181,136 + -1.6 3,181,315 + Pf6N2E2_2691 0.83 -0.4 3,181,441 + Pf6N2E2_2692 0.15 -1.0 3,181,707 + Pf6N2E2_2692 0.58 -1.1 3,181,707 + Pf6N2E2_2692 0.58 -3.2 3,181,851 + Pf6N2E2_2692 0.82 -3.0 3,181,852 - Pf6N2E2_2692 0.82 -1.7 3,181,897 + Pf6N2E2_2692 0.90 -3.0 3,181,897 + Pf6N2E2_2692 0.90 -1.6 3,181,898 - Pf6N2E2_2692 0.90 -2.3 3,181,900 - -2.2 3,181,900 - +2.2 3,181,900 - -2.9 3,181,900 - -2.6 3,182,112 - +1.3 3,182,162 - -0.4 3,182,244 + -1.3 3,182,245 - +1.3 3,182,245 - +1.5 3,182,881 - Pf6N2E2_2693 0.65 -1.3 3,182,881 - Pf6N2E2_2693 0.65 -1.1
Or see this region's nucleotide sequence