Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2628 and Pf6N2E2_2629 are separated by 346 nucleotides Pf6N2E2_2629 and Pf6N2E2_2630 are separated by 411 nucleotides
Pf6N2E2_2628 - Flagellar basal-body rod protein FlgF, at 3,089,678 to 3,090,415
_2628
Pf6N2E2_2629 - Phenylalanine hydroxylase transcriptional activator PhhR, at 3,090,762 to 3,092,324
_2629
Pf6N2E2_2630 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) , at 3,092,736 to 3,093,521
_2630
Position (kb)
3090
3091
3092
3093 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3090.120 kb on + strand, within Pf6N2E2_2628 at 3090.120 kb on + strand, within Pf6N2E2_2628 at 3090.120 kb on + strand, within Pf6N2E2_2628 at 3090.120 kb on + strand, within Pf6N2E2_2628 at 3090.121 kb on - strand, within Pf6N2E2_2628 at 3090.121 kb on - strand, within Pf6N2E2_2628 at 3090.121 kb on - strand, within Pf6N2E2_2628 at 3090.399 kb on + strand at 3090.399 kb on + strand at 3090.399 kb on + strand at 3090.399 kb on + strand at 3090.399 kb on + strand at 3090.399 kb on + strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.400 kb on - strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.405 kb on + strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.406 kb on - strand at 3090.557 kb on + strand at 3090.557 kb on + strand at 3090.558 kb on - strand at 3090.606 kb on + strand at 3090.606 kb on + strand at 3090.677 kb on - strand at 3090.723 kb on - strand at 3090.741 kb on - strand at 3090.791 kb on - strand at 3090.791 kb on - strand at 3090.791 kb on - strand at 3090.804 kb on - strand at 3090.818 kb on + strand at 3090.871 kb on + strand at 3090.871 kb on + strand at 3090.872 kb on - strand at 3090.872 kb on - strand at 3090.964 kb on + strand, within Pf6N2E2_2629 at 3091.228 kb on + strand, within Pf6N2E2_2629 at 3091.228 kb on + strand, within Pf6N2E2_2629 at 3091.229 kb on - strand, within Pf6N2E2_2629 at 3091.309 kb on + strand, within Pf6N2E2_2629 at 3091.309 kb on + strand, within Pf6N2E2_2629 at 3091.309 kb on + strand, within Pf6N2E2_2629 at 3091.309 kb on + strand, within Pf6N2E2_2629 at 3091.310 kb on - strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.626 kb on + strand, within Pf6N2E2_2629 at 3091.627 kb on - strand, within Pf6N2E2_2629 at 3091.627 kb on - strand, within Pf6N2E2_2629 at 3091.627 kb on - strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.745 kb on - strand, within Pf6N2E2_2629 at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.201 kb on - strand at 3092.201 kb on - strand at 3092.201 kb on - strand at 3092.249 kb on + strand at 3092.254 kb on + strand at 3092.522 kb on - strand at 3092.583 kb on + strand at 3092.584 kb on - strand at 3092.584 kb on - strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.666 kb on + strand at 3092.672 kb on + strand at 3092.689 kb on + strand at 3092.689 kb on + strand at 3092.690 kb on - strand at 3092.751 kb on + strand at 3092.751 kb on + strand at 3092.752 kb on - strand at 3092.790 kb on + strand at 3092.791 kb on - strand at 3092.871 kb on + strand, within Pf6N2E2_2630 at 3092.872 kb on - strand, within Pf6N2E2_2630 at 3093.073 kb on - strand, within Pf6N2E2_2630 at 3093.073 kb on - strand, within Pf6N2E2_2630 at 3093.201 kb on + strand, within Pf6N2E2_2630 at 3093.216 kb on + strand, within Pf6N2E2_2630 at 3093.216 kb on + strand, within Pf6N2E2_2630 at 3093.270 kb on + strand, within Pf6N2E2_2630 at 3093.270 kb on + strand, within Pf6N2E2_2630 at 3093.309 kb on + strand, within Pf6N2E2_2630 at 3093.309 kb on + strand, within Pf6N2E2_2630 at 3093.310 kb on - strand, within Pf6N2E2_2630 at 3093.310 kb on - strand, within Pf6N2E2_2630
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 3,090,120 + Pf6N2E2_2628 0.60 +1.3 3,090,120 + Pf6N2E2_2628 0.60 +0.1 3,090,120 + Pf6N2E2_2628 0.60 +2.2 3,090,120 + Pf6N2E2_2628 0.60 -0.3 3,090,121 - Pf6N2E2_2628 0.60 +1.4 3,090,121 - Pf6N2E2_2628 0.60 +1.3 3,090,121 - Pf6N2E2_2628 0.60 +0.4 3,090,399 + +0.8 3,090,399 + +0.9 3,090,399 + +0.3 3,090,399 + +0.2 3,090,399 + -1.4 3,090,399 + -1.0 3,090,400 - +1.4 3,090,400 - +1.7 3,090,400 - +2.2 3,090,400 - -1.3 3,090,400 - +0.5 3,090,400 - +0.6 3,090,400 - +1.1 3,090,400 - +0.4 3,090,400 - +0.2 3,090,400 - +0.7 3,090,400 - -1.2 3,090,400 - +0.4 3,090,405 + +0.1 3,090,405 + +2.0 3,090,405 + +0.3 3,090,405 + -0.8 3,090,405 + -1.1 3,090,405 + +0.5 3,090,405 + +1.3 3,090,405 + +0.1 3,090,405 + +0.6 3,090,406 - +0.9 3,090,406 - -0.4 3,090,406 - +0.2 3,090,406 - +0.8 3,090,406 - -0.6 3,090,406 - +0.8 3,090,406 - +0.1 3,090,406 - +0.5 3,090,557 + +0.3 3,090,557 + -0.3 3,090,558 - -0.6 3,090,606 + +0.6 3,090,606 + +0.5 3,090,677 - -0.5 3,090,723 - -0.8 3,090,741 - +0.0 3,090,791 - -1.9 3,090,791 - -1.1 3,090,791 - -1.3 3,090,804 - -1.2 3,090,818 + -1.4 3,090,871 + -2.2 3,090,871 + -0.4 3,090,872 - -0.4 3,090,872 - -3.0 3,090,964 + Pf6N2E2_2629 0.13 -2.6 3,091,228 + Pf6N2E2_2629 0.30 -1.9 3,091,228 + Pf6N2E2_2629 0.30 -1.8 3,091,229 - Pf6N2E2_2629 0.30 -1.6 3,091,309 + Pf6N2E2_2629 0.35 -0.7 3,091,309 + Pf6N2E2_2629 0.35 -1.3 3,091,309 + Pf6N2E2_2629 0.35 -2.1 3,091,309 + Pf6N2E2_2629 0.35 -0.6 3,091,310 - Pf6N2E2_2629 0.35 -1.9 3,091,626 + Pf6N2E2_2629 0.55 -2.5 3,091,626 + Pf6N2E2_2629 0.55 -1.9 3,091,626 + Pf6N2E2_2629 0.55 -1.4 3,091,626 + Pf6N2E2_2629 0.55 -1.9 3,091,626 + Pf6N2E2_2629 0.55 -0.4 3,091,626 + Pf6N2E2_2629 0.55 -2.2 3,091,627 - Pf6N2E2_2629 0.55 -2.7 3,091,627 - Pf6N2E2_2629 0.55 +0.6 3,091,627 - Pf6N2E2_2629 0.55 -2.4 3,091,744 + Pf6N2E2_2629 0.63 -0.7 3,091,744 + Pf6N2E2_2629 0.63 -0.6 3,091,744 + Pf6N2E2_2629 0.63 -3.0 3,091,744 + Pf6N2E2_2629 0.63 -2.2 3,091,744 + Pf6N2E2_2629 0.63 -1.2 3,091,744 + Pf6N2E2_2629 0.63 -3.1 3,091,744 + Pf6N2E2_2629 0.63 -1.9 3,091,744 + Pf6N2E2_2629 0.63 -1.4 3,091,744 + Pf6N2E2_2629 0.63 -3.1 3,091,744 + Pf6N2E2_2629 0.63 -0.4 3,091,745 - Pf6N2E2_2629 0.63 -1.2 3,092,200 + -1.3 3,092,200 + -0.9 3,092,200 + +0.2 3,092,200 + +0.2 3,092,201 - -1.1 3,092,201 - -1.0 3,092,201 - +0.3 3,092,249 + -0.4 3,092,254 + -0.2 3,092,522 - -0.2 3,092,583 + -0.3 3,092,584 - -0.2 3,092,584 - -1.8 3,092,613 + -0.3 3,092,613 + +1.0 3,092,613 + -0.2 3,092,613 + -0.6 3,092,613 + +0.9 3,092,614 - -1.6 3,092,614 - -2.1 3,092,614 - -2.4 3,092,614 - -2.2 3,092,614 - -0.3 3,092,614 - -0.8 3,092,614 - -1.7 3,092,614 - -0.3 3,092,614 - -2.8 3,092,614 - -1.2 3,092,614 - -2.2 3,092,666 + +1.8 3,092,672 + -1.5 3,092,689 + +1.4 3,092,689 + +0.3 3,092,690 - -2.7 3,092,751 + -1.8 3,092,751 + -1.9 3,092,752 - -0.6 3,092,790 + -1.2 3,092,791 - -0.4 3,092,871 + Pf6N2E2_2630 0.17 -1.7 3,092,872 - Pf6N2E2_2630 0.17 -0.5 3,093,073 - Pf6N2E2_2630 0.43 -1.6 3,093,073 - Pf6N2E2_2630 0.43 -1.6 3,093,201 + Pf6N2E2_2630 0.59 -1.4 3,093,216 + Pf6N2E2_2630 0.61 -2.1 3,093,216 + Pf6N2E2_2630 0.61 -0.7 3,093,270 + Pf6N2E2_2630 0.68 -1.9 3,093,270 + Pf6N2E2_2630 0.68 -2.0 3,093,309 + Pf6N2E2_2630 0.73 -2.1 3,093,309 + Pf6N2E2_2630 0.73 -1.9 3,093,310 - Pf6N2E2_2630 0.73 +0.2 3,093,310 - Pf6N2E2_2630 0.73 -1.3
Or see this region's nucleotide sequence