Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2118 and Pf6N2E2_2119 are separated by 12 nucleotides Pf6N2E2_2119 and Pf6N2E2_2120 overlap by 40 nucleotides
Pf6N2E2_2118 - Trehalose synthase (EC 5.4.99.16), at 2,517,595 to 2,520,939
_2118
Pf6N2E2_2119 - hypothetical protein, at 2,520,952 to 2,521,203
_2119
Pf6N2E2_2120 - Alpha-amylase (EC 3.2.1.1), at 2,521,164 to 2,523,161
_2120
Position (kb)
2520
2521
2522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.203 kb on + strand, within Pf6N2E2_2118 at 2520.293 kb on + strand, within Pf6N2E2_2118 at 2520.294 kb on - strand, within Pf6N2E2_2118 at 2520.410 kb on + strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.428 kb on + strand, within Pf6N2E2_2118 at 2520.500 kb on + strand, within Pf6N2E2_2118 at 2520.500 kb on + strand, within Pf6N2E2_2118 at 2520.527 kb on + strand, within Pf6N2E2_2118 at 2520.527 kb on + strand, within Pf6N2E2_2118 at 2520.528 kb on - strand, within Pf6N2E2_2118 at 2520.675 kb on + strand at 2520.746 kb on + strand at 2520.792 kb on - strand at 2520.792 kb on - strand at 2520.860 kb on - strand at 2520.872 kb on + strand at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2521.202 kb on - strand at 2521.228 kb on + strand at 2521.229 kb on - strand at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.457 kb on + strand, within Pf6N2E2_2120 at 2521.458 kb on - strand, within Pf6N2E2_2120 at 2521.484 kb on + strand, within Pf6N2E2_2120 at 2521.484 kb on + strand, within Pf6N2E2_2120 at 2521.570 kb on + strand, within Pf6N2E2_2120 at 2521.571 kb on - strand, within Pf6N2E2_2120 at 2521.571 kb on - strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.622 kb on - strand, within Pf6N2E2_2120 at 2521.622 kb on - strand, within Pf6N2E2_2120 at 2521.744 kb on + strand, within Pf6N2E2_2120 at 2521.784 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.913 kb on - strand, within Pf6N2E2_2120 at 2521.987 kb on - strand, within Pf6N2E2_2120 at 2522.092 kb on + strand, within Pf6N2E2_2120 at 2522.092 kb on + strand, within Pf6N2E2_2120 at 2522.093 kb on - strand, within Pf6N2E2_2120 at 2522.116 kb on + strand, within Pf6N2E2_2120 at 2522.116 kb on + strand, within Pf6N2E2_2120
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 2,520,065 + Pf6N2E2_2118 0.74 -1.2 2,520,065 + Pf6N2E2_2118 0.74 -0.6 2,520,065 + Pf6N2E2_2118 0.74 +0.2 2,520,065 + Pf6N2E2_2118 0.74 +1.5 2,520,065 + Pf6N2E2_2118 0.74 +1.1 2,520,065 + Pf6N2E2_2118 0.74 -1.2 2,520,065 + Pf6N2E2_2118 0.74 +0.3 2,520,065 + Pf6N2E2_2118 0.74 +0.8 2,520,065 + Pf6N2E2_2118 0.74 +1.0 2,520,066 - Pf6N2E2_2118 0.74 -0.6 2,520,066 - Pf6N2E2_2118 0.74 -0.2 2,520,066 - Pf6N2E2_2118 0.74 -0.6 2,520,066 - Pf6N2E2_2118 0.74 +1.1 2,520,066 - Pf6N2E2_2118 0.74 -0.1 2,520,146 + Pf6N2E2_2118 0.76 +0.5 2,520,146 + Pf6N2E2_2118 0.76 +1.1 2,520,146 + Pf6N2E2_2118 0.76 -1.5 2,520,203 + Pf6N2E2_2118 0.78 -0.2 2,520,293 + Pf6N2E2_2118 0.81 +0.0 2,520,294 - Pf6N2E2_2118 0.81 +0.4 2,520,410 + Pf6N2E2_2118 0.84 +2.3 2,520,411 - Pf6N2E2_2118 0.84 +0.4 2,520,411 - Pf6N2E2_2118 0.84 +0.1 2,520,411 - Pf6N2E2_2118 0.84 +0.4 2,520,428 + Pf6N2E2_2118 0.85 -0.7 2,520,500 + Pf6N2E2_2118 0.87 -0.5 2,520,500 + Pf6N2E2_2118 0.87 -0.5 2,520,527 + Pf6N2E2_2118 0.88 +0.7 2,520,527 + Pf6N2E2_2118 0.88 +1.3 2,520,528 - Pf6N2E2_2118 0.88 -0.8 2,520,675 + +0.5 2,520,746 + +1.9 2,520,792 - -0.2 2,520,792 - -1.9 2,520,860 - +2.1 2,520,872 + -0.9 2,520,991 + Pf6N2E2_2119 0.15 -0.9 2,520,991 + Pf6N2E2_2119 0.15 +0.1 2,520,991 + Pf6N2E2_2119 0.15 -0.0 2,520,991 + Pf6N2E2_2119 0.15 -0.7 2,520,992 - Pf6N2E2_2119 0.16 -3.4 2,520,992 - Pf6N2E2_2119 0.16 +0.0 2,520,992 - Pf6N2E2_2119 0.16 -0.2 2,520,992 - Pf6N2E2_2119 0.16 -0.9 2,521,202 - -0.5 2,521,228 + -1.8 2,521,229 - -0.3 2,521,435 + Pf6N2E2_2120 0.14 +0.2 2,521,435 + Pf6N2E2_2120 0.14 +0.9 2,521,435 + Pf6N2E2_2120 0.14 -0.2 2,521,435 + Pf6N2E2_2120 0.14 -0.7 2,521,457 + Pf6N2E2_2120 0.15 -1.4 2,521,458 - Pf6N2E2_2120 0.15 -0.0 2,521,484 + Pf6N2E2_2120 0.16 -0.3 2,521,484 + Pf6N2E2_2120 0.16 -0.2 2,521,570 + Pf6N2E2_2120 0.20 -0.0 2,521,571 - Pf6N2E2_2120 0.20 -0.4 2,521,571 - Pf6N2E2_2120 0.20 +0.7 2,521,621 + Pf6N2E2_2120 0.23 +1.7 2,521,621 + Pf6N2E2_2120 0.23 -0.4 2,521,621 + Pf6N2E2_2120 0.23 -1.7 2,521,621 + Pf6N2E2_2120 0.23 -1.5 2,521,621 + Pf6N2E2_2120 0.23 -0.2 2,521,621 + Pf6N2E2_2120 0.23 -1.8 2,521,621 + Pf6N2E2_2120 0.23 -1.1 2,521,622 - Pf6N2E2_2120 0.23 +1.1 2,521,622 - Pf6N2E2_2120 0.23 -0.2 2,521,744 + Pf6N2E2_2120 0.29 +0.4 2,521,784 - Pf6N2E2_2120 0.31 -1.0 2,521,823 - Pf6N2E2_2120 0.33 -0.1 2,521,823 - Pf6N2E2_2120 0.33 -0.2 2,521,823 - Pf6N2E2_2120 0.33 +1.0 2,521,828 + Pf6N2E2_2120 0.33 +0.7 2,521,828 + Pf6N2E2_2120 0.33 -0.0 2,521,828 + Pf6N2E2_2120 0.33 +0.5 2,521,828 + Pf6N2E2_2120 0.33 +0.7 2,521,828 + Pf6N2E2_2120 0.33 -0.5 2,521,829 - Pf6N2E2_2120 0.33 +0.1 2,521,829 - Pf6N2E2_2120 0.33 -0.2 2,521,829 - Pf6N2E2_2120 0.33 -0.4 2,521,829 - Pf6N2E2_2120 0.33 -0.2 2,521,829 - Pf6N2E2_2120 0.33 +1.6 2,521,913 - Pf6N2E2_2120 0.37 -0.4 2,521,987 - Pf6N2E2_2120 0.41 -1.7 2,522,092 + Pf6N2E2_2120 0.46 +0.5 2,522,092 + Pf6N2E2_2120 0.46 -1.9 2,522,093 - Pf6N2E2_2120 0.46 -1.8 2,522,116 + Pf6N2E2_2120 0.48 -0.4 2,522,116 + Pf6N2E2_2120 0.48 +0.2
Or see this region's nucleotide sequence