Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1975

Experiment: Chlorite 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1973 and Pf6N2E2_1974 are separated by 151 nucleotidesPf6N2E2_1974 and Pf6N2E2_1975 overlap by 1 nucleotidesPf6N2E2_1975 and Pf6N2E2_1976 are separated by 11 nucleotidesPf6N2E2_1976 and Pf6N2E2_1977 are separated by 216 nucleotides Pf6N2E2_1973 - FIG141751: hypothetical protein in PFGI-1-like cluster, at 2,339,249 to 2,340,397 _1973 Pf6N2E2_1974 - FIG141694: hypothetical protein in PFGI-1-like cluster, at 2,340,549 to 2,341,340 _1974 Pf6N2E2_1975 - Integrase regulator R, at 2,341,340 to 2,341,840 _1975 Pf6N2E2_1976 - Single-stranded DNA-binding protein, at 2,341,852 to 2,342,256 _1976 Pf6N2E2_1977 - DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster, at 2,342,473 to 2,344,023 _1977 Position (kb) 2341 2342Strain fitness (log2 ratio) -2 -1 0 1 2at 2340.359 kb on + strandat 2340.359 kb on + strandat 2340.360 kb on - strandat 2340.738 kb on + strand, within Pf6N2E2_1974at 2340.758 kb on - strand, within Pf6N2E2_1974at 2340.890 kb on - strand, within Pf6N2E2_1974at 2340.930 kb on + strand, within Pf6N2E2_1974at 2340.931 kb on - strand, within Pf6N2E2_1974at 2340.931 kb on - strand, within Pf6N2E2_1974at 2340.945 kb on + strand, within Pf6N2E2_1974at 2341.009 kb on + strand, within Pf6N2E2_1974at 2341.072 kb on - strand, within Pf6N2E2_1974at 2341.112 kb on + strand, within Pf6N2E2_1974at 2341.112 kb on + strand, within Pf6N2E2_1974at 2341.347 kb on + strandat 2341.347 kb on + strandat 2341.348 kb on - strandat 2341.407 kb on + strand, within Pf6N2E2_1975at 2341.408 kb on - strand, within Pf6N2E2_1975at 2341.727 kb on - strand, within Pf6N2E2_1975at 2341.727 kb on - strand, within Pf6N2E2_1975at 2341.805 kb on + strandat 2341.806 kb on - strandat 2341.836 kb on + strandat 2341.836 kb on + strandat 2341.837 kb on - strandat 2341.837 kb on - strandat 2341.879 kb on - strandat 2341.879 kb on - strandat 2341.882 kb on - strandat 2342.595 kb on - strandat 2342.695 kb on + strand, within Pf6N2E2_1977at 2342.696 kb on - strand, within Pf6N2E2_1977at 2342.696 kb on - strand, within Pf6N2E2_1977at 2342.808 kb on - strand, within Pf6N2E2_1977

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.00005 M
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2,340,359 + +0.2
2,340,359 + -0.1
2,340,360 - -0.6
2,340,738 + Pf6N2E2_1974 0.24 -1.3
2,340,758 - Pf6N2E2_1974 0.26 -0.4
2,340,890 - Pf6N2E2_1974 0.43 -0.3
2,340,930 + Pf6N2E2_1974 0.48 -1.1
2,340,931 - Pf6N2E2_1974 0.48 -0.1
2,340,931 - Pf6N2E2_1974 0.48 +1.3
2,340,945 + Pf6N2E2_1974 0.50 +1.0
2,341,009 + Pf6N2E2_1974 0.58 -2.5
2,341,072 - Pf6N2E2_1974 0.66 +0.4
2,341,112 + Pf6N2E2_1974 0.71 -1.8
2,341,112 + Pf6N2E2_1974 0.71 -0.2
2,341,347 + +0.7
2,341,347 + -2.3
2,341,348 - -0.1
2,341,407 + Pf6N2E2_1975 0.13 -1.2
2,341,408 - Pf6N2E2_1975 0.14 -1.4
2,341,727 - Pf6N2E2_1975 0.77 +0.4
2,341,727 - Pf6N2E2_1975 0.77 -1.2
2,341,805 + +1.0
2,341,806 - +0.4
2,341,836 + -0.3
2,341,836 + +2.0
2,341,837 - -2.5
2,341,837 - -1.2
2,341,879 - -0.8
2,341,879 - +0.6
2,341,882 - +0.1
2,342,595 - -0.2
2,342,695 + Pf6N2E2_1977 0.14 -0.4
2,342,696 - Pf6N2E2_1977 0.14 -0.1
2,342,696 - Pf6N2E2_1977 0.14 -0.3
2,342,808 - Pf6N2E2_1977 0.22 -0.3

Or see this region's nucleotide sequence