Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1973 and Pf6N2E2_1974 are separated by 151 nucleotides Pf6N2E2_1974 and Pf6N2E2_1975 overlap by 1 nucleotides Pf6N2E2_1975 and Pf6N2E2_1976 are separated by 11 nucleotides Pf6N2E2_1976 and Pf6N2E2_1977 are separated by 216 nucleotides
Pf6N2E2_1973 - FIG141751: hypothetical protein in PFGI-1-like cluster, at 2,339,249 to 2,340,397
_1973
Pf6N2E2_1974 - FIG141694: hypothetical protein in PFGI-1-like cluster, at 2,340,549 to 2,341,340
_1974
Pf6N2E2_1975 - Integrase regulator R, at 2,341,340 to 2,341,840
_1975
Pf6N2E2_1976 - Single-stranded DNA-binding protein, at 2,341,852 to 2,342,256
_1976
Pf6N2E2_1977 - DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster, at 2,342,473 to 2,344,023
_1977
Position (kb)
2341
2342 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2340.359 kb on + strand at 2340.359 kb on + strand at 2340.360 kb on - strand at 2340.738 kb on + strand, within Pf6N2E2_1974 at 2340.758 kb on - strand, within Pf6N2E2_1974 at 2340.890 kb on - strand, within Pf6N2E2_1974 at 2340.930 kb on + strand, within Pf6N2E2_1974 at 2340.931 kb on - strand, within Pf6N2E2_1974 at 2340.931 kb on - strand, within Pf6N2E2_1974 at 2340.945 kb on + strand, within Pf6N2E2_1974 at 2341.009 kb on + strand, within Pf6N2E2_1974 at 2341.072 kb on - strand, within Pf6N2E2_1974 at 2341.112 kb on + strand, within Pf6N2E2_1974 at 2341.112 kb on + strand, within Pf6N2E2_1974 at 2341.347 kb on + strand at 2341.347 kb on + strand at 2341.348 kb on - strand at 2341.407 kb on + strand, within Pf6N2E2_1975 at 2341.408 kb on - strand, within Pf6N2E2_1975 at 2341.727 kb on - strand, within Pf6N2E2_1975 at 2341.727 kb on - strand, within Pf6N2E2_1975 at 2341.805 kb on + strand at 2341.806 kb on - strand at 2341.836 kb on + strand at 2341.836 kb on + strand at 2341.837 kb on - strand at 2341.837 kb on - strand at 2341.879 kb on - strand at 2341.879 kb on - strand at 2341.882 kb on - strand at 2342.595 kb on - strand at 2342.695 kb on + strand, within Pf6N2E2_1977 at 2342.696 kb on - strand, within Pf6N2E2_1977 at 2342.696 kb on - strand, within Pf6N2E2_1977 at 2342.808 kb on - strand, within Pf6N2E2_1977
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 2,340,359 + +0.2 2,340,359 + -0.1 2,340,360 - -0.6 2,340,738 + Pf6N2E2_1974 0.24 -1.3 2,340,758 - Pf6N2E2_1974 0.26 -0.4 2,340,890 - Pf6N2E2_1974 0.43 -0.3 2,340,930 + Pf6N2E2_1974 0.48 -1.1 2,340,931 - Pf6N2E2_1974 0.48 -0.1 2,340,931 - Pf6N2E2_1974 0.48 +1.3 2,340,945 + Pf6N2E2_1974 0.50 +1.0 2,341,009 + Pf6N2E2_1974 0.58 -2.5 2,341,072 - Pf6N2E2_1974 0.66 +0.4 2,341,112 + Pf6N2E2_1974 0.71 -1.8 2,341,112 + Pf6N2E2_1974 0.71 -0.2 2,341,347 + +0.7 2,341,347 + -2.3 2,341,348 - -0.1 2,341,407 + Pf6N2E2_1975 0.13 -1.2 2,341,408 - Pf6N2E2_1975 0.14 -1.4 2,341,727 - Pf6N2E2_1975 0.77 +0.4 2,341,727 - Pf6N2E2_1975 0.77 -1.2 2,341,805 + +1.0 2,341,806 - +0.4 2,341,836 + -0.3 2,341,836 + +2.0 2,341,837 - -2.5 2,341,837 - -1.2 2,341,879 - -0.8 2,341,879 - +0.6 2,341,882 - +0.1 2,342,595 - -0.2 2,342,695 + Pf6N2E2_1977 0.14 -0.4 2,342,696 - Pf6N2E2_1977 0.14 -0.1 2,342,696 - Pf6N2E2_1977 0.14 -0.3 2,342,808 - Pf6N2E2_1977 0.22 -0.3
Or see this region's nucleotide sequence