Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1436

Experiment: Chlorite 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1435 and Pf6N2E2_1436 are separated by 40 nucleotidesPf6N2E2_1436 and Pf6N2E2_1437 are separated by 377 nucleotides Pf6N2E2_1435 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase, at 1,684,697 to 1,685,794 _1435 Pf6N2E2_1436 - FMN reductase (EC 1.5.1.29), at 1,685,835 to 1,686,398 _1436 Pf6N2E2_1437 - Acyl-CoA dehydrogenase family protein, at 1,686,776 to 1,688,020 _1437 Position (kb) 1685 1686 1687Strain fitness (log2 ratio) -2 -1 0 1 2at 1685.163 kb on - strand, within Pf6N2E2_1435at 1685.185 kb on - strand, within Pf6N2E2_1435at 1685.284 kb on - strand, within Pf6N2E2_1435at 1685.649 kb on + strand, within Pf6N2E2_1435at 1685.694 kb on + strandat 1685.694 kb on + strandat 1685.695 kb on - strandat 1685.695 kb on - strandat 1685.766 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.801 kb on + strandat 1685.802 kb on - strandat 1685.802 kb on - strandat 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1686.079 kb on - strand, within Pf6N2E2_1436at 1686.137 kb on - strand, within Pf6N2E2_1436at 1686.137 kb on - strand, within Pf6N2E2_1436at 1686.149 kb on - strand, within Pf6N2E2_1436at 1686.447 kb on - strandat 1686.483 kb on - strandat 1687.254 kb on - strand, within Pf6N2E2_1437at 1687.256 kb on + strand, within Pf6N2E2_1437at 1687.256 kb on + strand, within Pf6N2E2_1437at 1687.257 kb on - strand, within Pf6N2E2_1437at 1687.270 kb on + strand, within Pf6N2E2_1437at 1687.295 kb on + strand, within Pf6N2E2_1437at 1687.295 kb on + strand, within Pf6N2E2_1437at 1687.344 kb on + strand, within Pf6N2E2_1437

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.00005 M
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1,685,163 - Pf6N2E2_1435 0.42 -0.3
1,685,185 - Pf6N2E2_1435 0.44 -0.0
1,685,284 - Pf6N2E2_1435 0.53 -1.6
1,685,649 + Pf6N2E2_1435 0.87 +0.2
1,685,694 + +0.5
1,685,694 + -0.3
1,685,695 - -1.8
1,685,695 - -0.1
1,685,766 + +0.7
1,685,795 + +1.2
1,685,795 + +1.4
1,685,795 + +0.9
1,685,795 + -1.8
1,685,795 + +1.3
1,685,795 + -0.7
1,685,795 + +0.6
1,685,795 + -0.9
1,685,795 + -1.8
1,685,795 + +1.4
1,685,795 + +0.9
1,685,795 + -0.1
1,685,795 + +1.9
1,685,796 - +1.3
1,685,796 - -1.6
1,685,796 - -0.9
1,685,796 - -0.6
1,685,796 - -0.1
1,685,796 - -1.4
1,685,796 - -0.7
1,685,801 + +0.3
1,685,802 - -1.9
1,685,802 - -0.3
1,685,965 + Pf6N2E2_1436 0.23 -0.6
1,685,965 + Pf6N2E2_1436 0.23 +0.2
1,685,965 + Pf6N2E2_1436 0.23 -2.0
1,685,965 + Pf6N2E2_1436 0.23 -0.5
1,685,965 + Pf6N2E2_1436 0.23 -0.3
1,686,079 - Pf6N2E2_1436 0.43 -0.9
1,686,137 - Pf6N2E2_1436 0.54 -1.3
1,686,137 - Pf6N2E2_1436 0.54 -1.5
1,686,149 - Pf6N2E2_1436 0.56 -0.7
1,686,447 - -1.3
1,686,483 - -2.0
1,687,254 - Pf6N2E2_1437 0.38 +0.3
1,687,256 + Pf6N2E2_1437 0.39 -0.6
1,687,256 + Pf6N2E2_1437 0.39 +0.7
1,687,257 - Pf6N2E2_1437 0.39 -0.9
1,687,270 + Pf6N2E2_1437 0.40 +0.5
1,687,295 + Pf6N2E2_1437 0.42 +0.2
1,687,295 + Pf6N2E2_1437 0.42 -0.0
1,687,344 + Pf6N2E2_1437 0.46 -1.3

Or see this region's nucleotide sequence