Experiment: Chlorite 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1031 and Pf6N2E2_1032 are separated by 1 nucleotides Pf6N2E2_1032 and Pf6N2E2_1033 are separated by 25 nucleotides Pf6N2E2_1033 and Pf6N2E2_1034 are separated by 46 nucleotides Pf6N2E2_1034 and Pf6N2E2_1035 are separated by 84 nucleotides
Pf6N2E2_1031 - Alkanesulfonates transport system permease protein, at 1,205,278 to 1,206,222
_1031
Pf6N2E2_1032 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 1,206,224 to 1,207,036
_1032
Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087
_1033
Pf6N2E2_1034 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,208,134 to 1,208,943
_1034
Pf6N2E2_1035 - MotA/TolQ/ExbB proton channel family protein, at 1,209,028 to 1,209,753
_1035
Position (kb)
1207
1208
1209 Strain fitness (log2 ratio)
-1
0
1
2 at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.133 kb on + strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.134 kb on - strand at 1206.224 kb on - strand at 1206.757 kb on - strand, within Pf6N2E2_1032 at 1207.000 kb on + strand at 1207.006 kb on + strand at 1207.006 kb on + strand at 1207.007 kb on - strand at 1207.007 kb on - strand at 1207.035 kb on - strand at 1207.035 kb on - strand at 1207.263 kb on + strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.264 kb on - strand, within Pf6N2E2_1033 at 1207.528 kb on - strand, within Pf6N2E2_1033 at 1207.846 kb on - strand, within Pf6N2E2_1033 at 1207.927 kb on + strand, within Pf6N2E2_1033 at 1208.119 kb on + strand at 1208.120 kb on - strand at 1208.120 kb on - strand at 1208.395 kb on - strand, within Pf6N2E2_1034 at 1208.689 kb on + strand, within Pf6N2E2_1034 at 1208.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.00005 M remove 1,206,133 + +0.5 1,206,133 + +1.3 1,206,133 + -0.8 1,206,133 + +0.3 1,206,134 - +0.3 1,206,134 - +0.3 1,206,134 - -1.5 1,206,134 - +2.2 1,206,134 - -0.5 1,206,224 - -0.2 1,206,757 - Pf6N2E2_1032 0.66 -0.2 1,207,000 + +1.0 1,207,006 + -1.3 1,207,006 + +0.6 1,207,007 - +0.8 1,207,007 - +1.1 1,207,035 - +0.4 1,207,035 - +0.2 1,207,263 + Pf6N2E2_1033 0.20 -0.2 1,207,264 - Pf6N2E2_1033 0.20 -0.8 1,207,264 - Pf6N2E2_1033 0.20 -1.7 1,207,528 - Pf6N2E2_1033 0.45 +0.1 1,207,846 - Pf6N2E2_1033 0.76 -1.6 1,207,927 + Pf6N2E2_1033 0.84 -1.0 1,208,119 + -1.1 1,208,120 - +0.8 1,208,120 - -0.9 1,208,395 - Pf6N2E2_1034 0.32 -0.4 1,208,689 + Pf6N2E2_1034 0.69 -1.5 1,208,942 - -0.7
Or see this region's nucleotide sequence