Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4591

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4590 and Pf1N1B4_4591 are separated by 1 nucleotidesPf1N1B4_4591 and Pf1N1B4_4592 are separated by 1 nucleotides Pf1N1B4_4590 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,060,449 to 5,061,900 _4590 Pf1N1B4_4591 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 5,061,902 to 5,062,921 _4591 Pf1N1B4_4592 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,062,923 to 5,063,996 _4592 Position (kb) 5061 5062 5063Strain fitness (log2 ratio) -2 -1 0 1at 5061.007 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590at 5061.293 kb on - strand, within Pf1N1B4_4590at 5061.681 kb on - strand, within Pf1N1B4_4590at 5061.681 kb on - strand, within Pf1N1B4_4590at 5062.221 kb on + strand, within Pf1N1B4_4591at 5062.603 kb on - strandat 5062.970 kb on - strandat 5063.249 kb on - strand, within Pf1N1B4_4592at 5063.354 kb on - strand, within Pf1N1B4_4592at 5063.746 kb on + strand, within Pf1N1B4_4592at 5063.747 kb on - strand, within Pf1N1B4_4592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
5,061,007 - Pf1N1B4_4590 0.38 -1.0
5,061,239 - Pf1N1B4_4590 0.54 +0.5
5,061,239 - Pf1N1B4_4590 0.54 -0.4
5,061,293 - Pf1N1B4_4590 0.58 +0.2
5,061,681 - Pf1N1B4_4590 0.85 +0.6
5,061,681 - Pf1N1B4_4590 0.85 -2.0
5,062,221 + Pf1N1B4_4591 0.31 -0.4
5,062,603 - -0.9
5,062,970 - +0.9
5,063,249 - Pf1N1B4_4592 0.30 -0.8
5,063,354 - Pf1N1B4_4592 0.40 -0.4
5,063,746 + Pf1N1B4_4592 0.77 -0.7
5,063,747 - Pf1N1B4_4592 0.77 -0.3

Or see this region's nucleotide sequence