Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01070

Experiment: H2 McCas deepwell complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01065 and MMP_RS01070 are separated by 343 nucleotidesMMP_RS01070 and MMP_RS01075 are separated by 84 nucleotidesMMP_RS01075 and MMP_RS01080 are separated by 281 nucleotides MMP_RS01065: MMP_RS01065 - alpha/beta hydrolase, at 199,808 to 200,512 _RS01065 MMP_RS01070: MMP_RS01070 - hypothetical protein, at 200,856 to 201,914 _RS01070 MMP_RS01075: MMP_RS01075 - hypothetical protein, at 201,999 to 202,223 _RS01075 MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332 _RS01080 Position (kb) 200 201 202Strain fitness (log2 ratio) -1 0 1 2at 199.862 kb on + strandat 199.869 kb on - strandat 199.938 kb on - strand, within MMP_RS01065at 199.946 kb on - strand, within MMP_RS01065at 199.946 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.972 kb on - strand, within MMP_RS01065at 199.973 kb on + strand, within MMP_RS01065at 199.997 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.037 kb on + strand, within MMP_RS01065at 200.060 kb on - strand, within MMP_RS01065at 200.093 kb on - strand, within MMP_RS01065at 200.094 kb on + strand, within MMP_RS01065at 200.156 kb on - strand, within MMP_RS01065at 200.189 kb on - strand, within MMP_RS01065at 200.189 kb on - strand, within MMP_RS01065at 200.197 kb on - strand, within MMP_RS01065at 200.202 kb on - strand, within MMP_RS01065at 200.212 kb on - strand, within MMP_RS01065at 200.256 kb on - strand, within MMP_RS01065at 200.257 kb on + strand, within MMP_RS01065at 200.283 kb on + strand, within MMP_RS01065at 200.549 kb on - strandat 200.630 kb on + strandat 200.643 kb on + strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.644 kb on - strandat 200.650 kb on - strandat 200.941 kb on - strandat 200.942 kb on + strandat 200.980 kb on - strand, within MMP_RS01070at 200.980 kb on - strand, within MMP_RS01070at 200.980 kb on - strand, within MMP_RS01070at 200.986 kb on - strand, within MMP_RS01070at 200.998 kb on - strand, within MMP_RS01070at 201.098 kb on - strand, within MMP_RS01070at 201.159 kb on - strand, within MMP_RS01070at 201.237 kb on - strand, within MMP_RS01070at 201.282 kb on + strand, within MMP_RS01070at 201.334 kb on + strand, within MMP_RS01070at 201.336 kb on + strand, within MMP_RS01070at 201.342 kb on - strand, within MMP_RS01070at 201.379 kb on + strand, within MMP_RS01070at 201.380 kb on - strand, within MMP_RS01070at 201.391 kb on - strand, within MMP_RS01070at 201.392 kb on + strand, within MMP_RS01070at 201.437 kb on - strand, within MMP_RS01070at 201.443 kb on - strand, within MMP_RS01070at 201.461 kb on - strand, within MMP_RS01070at 201.466 kb on - strand, within MMP_RS01070at 201.504 kb on + strand, within MMP_RS01070at 201.559 kb on + strand, within MMP_RS01070at 201.583 kb on - strand, within MMP_RS01070at 201.583 kb on - strand, within MMP_RS01070at 201.583 kb on - strand, within MMP_RS01070at 201.588 kb on - strand, within MMP_RS01070at 201.589 kb on + strand, within MMP_RS01070at 201.601 kb on + strand, within MMP_RS01070at 201.620 kb on - strand, within MMP_RS01070at 201.656 kb on - strand, within MMP_RS01070at 201.657 kb on + strand, within MMP_RS01070at 201.658 kb on - strand, within MMP_RS01070at 201.659 kb on + strand, within MMP_RS01070at 201.659 kb on + strand, within MMP_RS01070at 201.659 kb on + strand, within MMP_RS01070at 201.665 kb on + strand, within MMP_RS01070at 201.795 kb on - strand, within MMP_RS01070at 201.888 kb on - strandat 201.889 kb on + strandat 201.894 kb on + strandat 201.895 kb on - strandat 201.933 kb on - strandat 201.938 kb on + strandat 202.195 kb on - strand, within MMP_RS01075at 202.200 kb on + strand, within MMP_RS01075at 202.204 kb on - strandat 202.384 kb on + strandat 202.394 kb on - strandat 202.428 kb on - strandat 202.428 kb on - strandat 202.464 kb on - strandat 202.465 kb on + strandat 202.466 kb on - strandat 202.466 kb on - strandat 202.466 kb on - strandat 202.467 kb on + strandat 202.488 kb on + strandat 202.488 kb on + strandat 202.491 kb on + strandat 202.494 kb on - strandat 202.495 kb on + strandat 202.554 kb on - strandat 202.760 kb on - strand, within MMP_RS01080at 202.771 kb on + strand, within MMP_RS01080at 202.771 kb on + strand, within MMP_RS01080at 202.800 kb on - strand, within MMP_RS01080at 202.814 kb on + strand, within MMP_RS01080at 202.846 kb on + strand, within MMP_RS01080at 202.852 kb on + strand, within MMP_RS01080

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas deepwell complete
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199,862 + -0.1
199,869 - -0.4
199,938 - MMP_RS01065 0.18 +0.6
199,946 - MMP_RS01065 0.20 -0.0
199,946 - MMP_RS01065 0.20 +1.6
199,972 - MMP_RS01065 0.23 -0.0
199,972 - MMP_RS01065 0.23 +0.3
199,972 - MMP_RS01065 0.23 -0.1
199,973 + MMP_RS01065 0.23 -0.3
199,997 + MMP_RS01065 0.27 -0.4
200,037 + MMP_RS01065 0.32 +0.8
200,037 + MMP_RS01065 0.32 +1.0
200,037 + MMP_RS01065 0.32 +0.7
200,060 - MMP_RS01065 0.36 +0.0
200,093 - MMP_RS01065 0.40 +0.9
200,094 + MMP_RS01065 0.41 -0.3
200,156 - MMP_RS01065 0.49 +1.3
200,189 - MMP_RS01065 0.54 -0.8
200,189 - MMP_RS01065 0.54 +0.0
200,197 - MMP_RS01065 0.55 +0.1
200,202 - MMP_RS01065 0.56 +0.1
200,212 - MMP_RS01065 0.57 +0.2
200,256 - MMP_RS01065 0.64 +0.1
200,257 + MMP_RS01065 0.64 -0.3
200,283 + MMP_RS01065 0.67 +0.9
200,549 - +0.4
200,630 + -0.0
200,643 + +0.2
200,644 - +0.7
200,644 - +0.1
200,644 - +0.7
200,644 - +0.2
200,650 - -0.2
200,941 - +0.4
200,942 + +0.8
200,980 - MMP_RS01070 0.12 -0.8
200,980 - MMP_RS01070 0.12 +2.1
200,980 - MMP_RS01070 0.12 +1.2
200,986 - MMP_RS01070 0.12 -0.4
200,998 - MMP_RS01070 0.13 +0.3
201,098 - MMP_RS01070 0.23 -0.1
201,159 - MMP_RS01070 0.29 +0.0
201,237 - MMP_RS01070 0.36 +0.6
201,282 + MMP_RS01070 0.40 +0.6
201,334 + MMP_RS01070 0.45 +0.2
201,336 + MMP_RS01070 0.45 +0.4
201,342 - MMP_RS01070 0.46 +0.8
201,379 + MMP_RS01070 0.49 +0.9
201,380 - MMP_RS01070 0.49 +2.0
201,391 - MMP_RS01070 0.51 -0.0
201,392 + MMP_RS01070 0.51 +0.2
201,437 - MMP_RS01070 0.55 -0.4
201,443 - MMP_RS01070 0.55 +0.3
201,461 - MMP_RS01070 0.57 +0.1
201,466 - MMP_RS01070 0.58 +0.1
201,504 + MMP_RS01070 0.61 +0.7
201,559 + MMP_RS01070 0.66 -0.0
201,583 - MMP_RS01070 0.69 +0.3
201,583 - MMP_RS01070 0.69 +0.9
201,583 - MMP_RS01070 0.69 +0.5
201,588 - MMP_RS01070 0.69 +0.7
201,589 + MMP_RS01070 0.69 +0.4
201,601 + MMP_RS01070 0.70 -0.3
201,620 - MMP_RS01070 0.72 +0.1
201,656 - MMP_RS01070 0.76 -0.2
201,657 + MMP_RS01070 0.76 +0.3
201,658 - MMP_RS01070 0.76 +1.4
201,659 + MMP_RS01070 0.76 +0.3
201,659 + MMP_RS01070 0.76 +1.0
201,659 + MMP_RS01070 0.76 +0.0
201,665 + MMP_RS01070 0.76 -0.2
201,795 - MMP_RS01070 0.89 +0.7
201,888 - -0.0
201,889 + -0.0
201,894 + -0.7
201,895 - +0.3
201,933 - -0.3
201,938 + +0.1
202,195 - MMP_RS01075 0.87 -0.8
202,200 + MMP_RS01075 0.89 +0.4
202,204 - -0.1
202,384 + -0.3
202,394 - -1.3
202,428 - +0.9
202,428 - +1.5
202,464 - +0.3
202,465 + -0.1
202,466 - +1.6
202,466 - -0.4
202,466 - -0.2
202,467 + +1.1
202,488 + -0.2
202,488 + -0.8
202,491 + +0.1
202,494 - +0.2
202,495 + +0.1
202,554 - -0.1
202,760 - MMP_RS01080 0.31 -0.6
202,771 + MMP_RS01080 0.32 -0.1
202,771 + MMP_RS01080 0.32 -1.1
202,800 - MMP_RS01080 0.36 -0.1
202,814 + MMP_RS01080 0.37 +0.8
202,846 + MMP_RS01080 0.41 +0.3
202,852 + MMP_RS01080 0.42 -1.0

Or see this region's nucleotide sequence