Strain Fitness in Pantoea sp. MT58 around IAI47_19610

Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
150,408	+				-2.2
150,520	-		IAI47_19605	0.21	-0.6
150,534	+		IAI47_19605	0.23	-0.2
150,547	+		IAI47_19605	0.25	-1.2
150,548	-		IAI47_19605	0.25	+0.9
150,548	-		IAI47_19605	0.25	-0.2
150,584	-		IAI47_19605	0.30	+3.7
150,584	-		IAI47_19605	0.30	+3.1
150,672	+		IAI47_19605	0.42	+1.7
150,673	-		IAI47_19605	0.42	+1.5
150,716	-		IAI47_19605	0.49	-0.4
150,716	-		IAI47_19605	0.49	-0.6
150,716	-		IAI47_19605	0.49	+1.1
150,716	-		IAI47_19605	0.49	+0.8
150,724	+		IAI47_19605	0.50	+0.1
150,725	-		IAI47_19605	0.50	-0.6
150,831	-		IAI47_19605	0.65	-1.6
150,831	-		IAI47_19605	0.65	-0.0
150,852	+		IAI47_19605	0.68	-0.6
150,853	-		IAI47_19605	0.68	+0.2
150,922	+		IAI47_19605	0.78	-0.2
150,922	+		IAI47_19605	0.78	-1.4
150,922	+		IAI47_19605	0.78	+1.5
150,922	+		IAI47_19605	0.78	+0.7
150,922	+		IAI47_19605	0.78	+2.4
150,922	+		IAI47_19605	0.78	+2.1
150,922	+		IAI47_19605	0.78	+0.3
150,922	+		IAI47_19605	0.78	-0.4
150,922	+		IAI47_19605	0.78	-1.6
150,922	+		IAI47_19605	0.78	-0.6
150,922	+		IAI47_19605	0.78	+2.6
150,922	+		IAI47_19605	0.78	+0.1
150,923	-		IAI47_19605	0.78	+0.7
150,923	-		IAI47_19605	0.78	+1.4
150,923	-		IAI47_19605	0.78	-0.2
150,923	-		IAI47_19605	0.78	+1.4
150,923	-		IAI47_19605	0.78	+2.8
150,937	+		IAI47_19605	0.80	-1.4
150,937	+		IAI47_19605	0.80	+1.0
150,938	-		IAI47_19605	0.80	+1.0
150,965	+		IAI47_19605	0.84	+1.0
150,965	+		IAI47_19605	0.84	-0.9
150,999	+		IAI47_19605	0.89	-0.5
150,999	+		IAI47_19605	0.89	-1.3
150,999	+		IAI47_19605	0.89	-0.5
150,999	+		IAI47_19605	0.89	-1.4
150,999	+		IAI47_19605	0.89	-0.9
150,999	+		IAI47_19605	0.89	-1.3
150,999	+		IAI47_19605	0.89	+0.1
151,000	-		IAI47_19605	0.89	-1.3
151,000	-		IAI47_19605	0.89	+0.4
151,000	-		IAI47_19605	0.89	-0.4
151,000	-		IAI47_19605	0.89	+1.4
151,003	+		IAI47_19605	0.89	-1.5
151,003	+		IAI47_19605	0.89	+1.0
151,004	-		IAI47_19605	0.90	+0.4
151,004	-		IAI47_19605	0.90	-0.9
151,004	-		IAI47_19605	0.90	+0.8
151,004	-		IAI47_19605	0.90	-0.9
151,004	-		IAI47_19605	0.90	-1.7
151,004	-		IAI47_19605	0.90	-0.7
151,045	+				-0.7
151,045	+				+1.1
151,045	+				-0.2
151,045	+				-0.9
151,046	-				-0.0
151,046	-				-2.8
151,088	+				+0.1
151,088	+				+0.7
151,108	-				-0.6
151,108	-				+0.2
151,108	-				+2.4
151,108	-				+2.8
151,108	-				+3.1
151,108	-				-1.9
151,126	+				+0.1
151,126	+				+0.4
151,127	-				+1.4
151,252	-				+1.4
151,252	-				-1.2
151,253	+				+2.2
151,253	+				-0.5
151,253	+				-1.8
151,258	+				+0.4
151,258	+				-0.9
151,258	+				+1.5
151,258	+				-1.8
151,258	+				-0.4
151,258	+				+2.0
151,259	-				+1.4
151,259	-				-0.1
151,259	-				+0.6
151,259	-				+1.1
151,262	+				-0.0
151,263	-				-1.2
151,293	+				-0.9
151,293	+				+0.2
151,294	-				-1.6
151,294	-				-0.9
151,313	-				-0.3
151,373	+				-0.9
151,373	+				-0.9
151,373	+				+0.9
151,391	+				+0.5
151,391	+				-0.5
151,392	-				-0.9
151,392	-				-0.9
151,392	-				+0.8
151,393	+				+1.0
151,393	+				+1.5
151,393	+				+1.4
151,393	+				+0.7
151,393	+				-1.1
151,393	+				-0.2
151,455	+				+0.8
151,455	+				+1.6
151,455	+				+0.1
151,455	+				-1.4
151,455	+				+0.4
151,456	-				-0.2
151,456	-				+0.2
151,459	+				-1.9
151,459	+				+0.9
151,460	-				+2.2
151,460	-				-0.2
151,460	-				+2.4
151,514	+		IAI47_19610	0.11	-0.9
151,514	+		IAI47_19610	0.11	+0.3
151,515	-		IAI47_19610	0.11	-0.9
151,529	+		IAI47_19610	0.12	+1.5
151,529	+		IAI47_19610	0.12	+1.4
151,529	+		IAI47_19610	0.12	+1.8
151,529	+		IAI47_19610	0.12	+1.1
151,530	-		IAI47_19610	0.12	-0.9
151,532	-		IAI47_19610	0.13	+0.6
151,546	-		IAI47_19610	0.13	-1.0
151,580	+		IAI47_19610	0.16	-0.9
151,594	+		IAI47_19610	0.17	+1.0
151,594	+		IAI47_19610	0.17	-1.2
151,594	+		IAI47_19610	0.17	+2.2
151,595	-		IAI47_19610	0.17	-3.8
151,595	-		IAI47_19610	0.17	+0.6
151,595	-		IAI47_19610	0.17	+1.1
151,595	-		IAI47_19610	0.17	+3.4
151,601	+		IAI47_19610	0.17	+0.4
151,607	-		IAI47_19610	0.18	-2.4
151,617	-		IAI47_19610	0.18	+0.2
151,688	-		IAI47_19610	0.23	-1.2
151,696	+		IAI47_19610	0.24	+0.6
151,696	+		IAI47_19610	0.24	+0.5
151,696	+		IAI47_19610	0.24	+0.9
151,697	-		IAI47_19610	0.24	-0.6
151,697	-		IAI47_19610	0.24	+2.0
151,697	-		IAI47_19610	0.24	+0.4
151,697	-		IAI47_19610	0.24	-0.6
151,697	-		IAI47_19610	0.24	+0.2
151,697	-		IAI47_19610	0.24	-0.4
151,697	-		IAI47_19610	0.24	+0.8
151,697	-		IAI47_19610	0.24	+2.2
151,697	-		IAI47_19610	0.24	+0.6
151,697	-		IAI47_19610	0.24	-2.9
151,715	+		IAI47_19610	0.25	+2.4
151,715	+		IAI47_19610	0.25	-0.3
151,715	+		IAI47_19610	0.25	+4.2
151,715	+		IAI47_19610	0.25	+1.2
151,716	-		IAI47_19610	0.25	+0.1
151,716	-		IAI47_19610	0.25	-3.8
151,716	-		IAI47_19610	0.25	+2.0
151,716	-		IAI47_19610	0.25	-0.2
151,716	-		IAI47_19610	0.25	+3.9
151,719	+		IAI47_19610	0.26	+0.4
151,720	-		IAI47_19610	0.26	+1.7
151,720	-		IAI47_19610	0.26	+0.2
151,802	+		IAI47_19610	0.31	+1.9
151,803	-		IAI47_19610	0.31	+2.4
151,846	+		IAI47_19610	0.34	+0.4
151,846	+		IAI47_19610	0.34	+0.3
151,846	+		IAI47_19610	0.34	-0.2
151,847	-		IAI47_19610	0.35	-1.5
151,847	-		IAI47_19610	0.35	-0.5
151,847	-		IAI47_19610	0.35	-0.2
151,849	+		IAI47_19610	0.35	-0.6
151,849	+		IAI47_19610	0.35	-2.7
151,850	-		IAI47_19610	0.35	-0.8
151,948	+		IAI47_19610	0.42	+1.4
151,948	+		IAI47_19610	0.42	-1.1
151,949	-		IAI47_19610	0.42	+0.2
151,957	+		IAI47_19610	0.42	-0.8
151,957	+		IAI47_19610	0.42	-1.6
151,978	+		IAI47_19610	0.44	+1.4
151,980	+		IAI47_19610	0.44	+0.1
151,981	-		IAI47_19610	0.44	+1.2
151,981	-		IAI47_19610	0.44	-0.6
151,983	-		IAI47_19610	0.44	-0.2
151,983	-		IAI47_19610	0.44	-0.7
152,117	+		IAI47_19610	0.53	+0.4
152,158	+		IAI47_19610	0.56	-0.5
152,158	+		IAI47_19610	0.56	-2.9
152,158	+		IAI47_19610	0.56	+0.2
152,158	+		IAI47_19610	0.56	-1.4
152,163	+		IAI47_19610	0.57	+2.4
152,163	+		IAI47_19610	0.57	+1.8
152,164	-		IAI47_19610	0.57	-0.5
152,174	+		IAI47_19610	0.57	+1.4
152,174	+		IAI47_19610	0.57	+1.9
152,174	+		IAI47_19610	0.57	-0.2
152,174	+		IAI47_19610	0.57	-0.2
152,231	+		IAI47_19610	0.61	-1.2
152,231	+		IAI47_19610	0.61	-2.5
152,258	-		IAI47_19610	0.63	-1.2
152,299	+		IAI47_19610	0.66	+1.6
152,299	+		IAI47_19610	0.66	+4.3
152,344	+		IAI47_19610	0.69	+0.1
152,344	+		IAI47_19610	0.69	+1.2
152,344	+		IAI47_19610	0.69	+2.0
152,345	-		IAI47_19610	0.69	+0.8
152,402	+		IAI47_19610	0.73	+0.6
152,402	+		IAI47_19610	0.73	-1.5
152,402	+		IAI47_19610	0.73	+0.2
152,402	+		IAI47_19610	0.73	-2.1
152,403	-		IAI47_19610	0.73	+0.7
152,403	-		IAI47_19610	0.73	-0.2
152,407	+		IAI47_19610	0.74	+0.9
152,408	-		IAI47_19610	0.74	+0.2
152,408	-		IAI47_19610	0.74	+3.3
152,438	-		IAI47_19610	0.76	+1.6
152,480	+		IAI47_19610	0.79	+0.4
152,481	-		IAI47_19610	0.79	-0.1
152,481	-		IAI47_19610	0.79	-1.4
152,485	+		IAI47_19610	0.79	-0.5
152,485	+		IAI47_19610	0.79	+0.1
152,486	-		IAI47_19610	0.79	+1.6
152,486	-		IAI47_19610	0.79	-0.6
152,549	+		IAI47_19610	0.84	+0.4
152,549	+		IAI47_19610	0.84	+1.4
152,550	-		IAI47_19610	0.84	+0.6
152,569	+		IAI47_19610	0.85	+3.0
152,597	-		IAI47_19610	0.87	+2.6
152,597	-		IAI47_19610	0.87	-1.1
152,675	+				+0.0
152,676	-				+1.2
152,676	-				+0.4
152,688	+				-0.3
152,751	+				+2.4
152,821	-				+1.7
152,827	+				+0.5
152,897	-				+0.8
152,909	+				+2.1
152,910	-				+3.0
152,916	-				-0.6
152,916	-				-1.5
152,974	+		IAI47_19615	0.11	-1.1
152,974	+		IAI47_19615	0.11	-0.4
152,975	-		IAI47_19615	0.11	-0.7
152,975	-		IAI47_19615	0.11	-0.1
152,975	-		IAI47_19615	0.11	-1.2
152,975	-		IAI47_19615	0.11	+1.1
152,975	-		IAI47_19615	0.11	-0.0
153,005	+		IAI47_19615	0.13	-1.1
153,006	-		IAI47_19615	0.13	-0.6
153,006	-		IAI47_19615	0.13	+1.7
153,079	+		IAI47_19615	0.18	+1.1
153,080	-		IAI47_19615	0.18	-1.2
153,080	-		IAI47_19615	0.18	-1.4
153,135	+		IAI47_19615	0.22	+1.2
153,135	+		IAI47_19615	0.22	+0.8
153,135	+		IAI47_19615	0.22	+2.5
153,136	-		IAI47_19615	0.22	-1.2
153,382	+		IAI47_19615	0.39	-3.1
153,409	-		IAI47_19615	0.41	-0.2
153,409	-		IAI47_19615	0.41	-2.3
153,423	+		IAI47_19615	0.42	+1.6
153,424	-		IAI47_19615	0.42	+0.3
153,458	-		IAI47_19615	0.44	-0.6
153,458	-		IAI47_19615	0.44	+0.4
153,613	+		IAI47_19615	0.55	-0.3
153,613	+		IAI47_19615	0.55	-1.4
153,614	-		IAI47_19615	0.55	+2.2
153,615	+		IAI47_19615	0.55	-1.8
153,615	+		IAI47_19615	0.55	-1.7
153,615	+		IAI47_19615	0.55	-1.1
153,615	+		IAI47_19615	0.55	+2.8
153,615	+		IAI47_19615	0.55	-2.0
153,615	+		IAI47_19615	0.55	+0.1
153,615	+		IAI47_19615	0.55	+2.2
153,615	+		IAI47_19615	0.55	-0.7
153,616	-		IAI47_19615	0.55	+1.1
153,616	-		IAI47_19615	0.55	-1.4
153,616	-		IAI47_19615	0.55	-0.9
153,616	-		IAI47_19615	0.55	-0.3
153,616	-		IAI47_19615	0.55	+0.7
153,616	-		IAI47_19615	0.55	+1.8
153,621	+		IAI47_19615	0.55	+1.2
153,621	+		IAI47_19615	0.55	-1.4
153,621	+		IAI47_19615	0.55	+1.6
153,621	+		IAI47_19615	0.55	-1.6
153,621	+		IAI47_19615	0.55	+0.4
153,621	+		IAI47_19615	0.55	+0.3
153,621	+		IAI47_19615	0.55	-0.2
153,622	-		IAI47_19615	0.55	+0.4
153,622	-		IAI47_19615	0.55	-0.2
153,622	-		IAI47_19615	0.55	-2.1
153,622	-		IAI47_19615	0.55	+1.4
153,622	-		IAI47_19615	0.55	+0.7
153,622	-		IAI47_19615	0.55	+0.3
153,622	-		IAI47_19615	0.55	-0.6
153,622	-		IAI47_19615	0.55	+0.2
153,642	-		IAI47_19615	0.57	+0.9
153,742	+		IAI47_19615	0.64	-0.6
153,743	-		IAI47_19615	0.64	+1.1
153,743	-		IAI47_19615	0.64	+2.0
153,743	-		IAI47_19615	0.64	-0.5
153,745	+		IAI47_19615	0.64	-0.9
153,745	+		IAI47_19615	0.64	-0.5
153,745	+		IAI47_19615	0.64	+0.1
153,746	-		IAI47_19615	0.64	+0.2
153,746	-		IAI47_19615	0.64	+0.4
153,746	-		IAI47_19615	0.64	+1.4
153,746	-		IAI47_19615	0.64	+1.4