Strain Fitness in Pantoea sp. MT58 around IAI47_14130

Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,984,137	+		IAI47_14120	0.55	-1.3
2,984,138	-		IAI47_14120	0.55	-0.1
2,984,138	-		IAI47_14120	0.55	-1.0
2,984,140	+		IAI47_14120	0.55	-0.4
2,984,140	+		IAI47_14120	0.55	+1.9
2,984,140	+		IAI47_14120	0.55	+1.2
2,984,140	+		IAI47_14120	0.55	+0.7
2,984,141	-		IAI47_14120	0.55	+3.6
2,984,141	-		IAI47_14120	0.55	-1.3
2,984,144	+		IAI47_14120	0.56	-0.6
2,984,144	+		IAI47_14120	0.56	-1.4
2,984,145	-		IAI47_14120	0.56	-0.8
2,984,145	-		IAI47_14120	0.56	+1.1
2,984,171	+		IAI47_14120	0.58	-1.5
2,984,179	-		IAI47_14120	0.58	-1.3
2,984,179	-		IAI47_14120	0.58	-0.6
2,984,189	-		IAI47_14120	0.59	+1.7
2,984,253	+		IAI47_14120	0.65	+1.3
2,984,253	+		IAI47_14120	0.65	+0.0
2,984,254	-		IAI47_14120	0.65	-2.7
2,984,254	-		IAI47_14120	0.65	-2.1
2,984,254	-		IAI47_14120	0.65	-2.0
2,984,254	-		IAI47_14120	0.65	+1.2
2,984,254	-		IAI47_14120	0.65	+1.2
2,984,254	-		IAI47_14120	0.65	-0.6
2,984,262	+		IAI47_14120	0.65	+0.6
2,984,263	-		IAI47_14120	0.65	+0.6
2,984,352	+		IAI47_14120	0.73	+0.6
2,984,352	+		IAI47_14120	0.73	+1.1
2,984,352	+		IAI47_14120	0.73	-1.1
2,984,352	+		IAI47_14120	0.73	-1.1
2,984,352	+		IAI47_14120	0.73	+1.2
2,984,352	+		IAI47_14120	0.73	-0.1
2,984,352	+		IAI47_14120	0.73	+0.5
2,984,353	-		IAI47_14120	0.73	-2.6
2,984,353	-		IAI47_14120	0.73	+1.3
2,984,353	-		IAI47_14120	0.73	+0.6
2,984,353	-		IAI47_14120	0.73	-1.1
2,984,362	+		IAI47_14120	0.74	-1.6
2,984,362	+		IAI47_14120	0.74	-0.4
2,984,362	+		IAI47_14120	0.74	+1.7
2,984,362	+		IAI47_14120	0.74	+0.3
2,984,363	-		IAI47_14120	0.74	+0.2
2,984,363	-		IAI47_14120	0.74	-0.3
2,984,363	-		IAI47_14120	0.74	+0.2
2,984,363	-		IAI47_14120	0.74	+0.7
2,984,363	-		IAI47_14120	0.74	-1.2
2,984,363	-		IAI47_14120	0.74	+1.7
2,984,408	+		IAI47_14120	0.78	-1.0
2,984,409	-		IAI47_14120	0.78	+0.7
2,984,409	-		IAI47_14120	0.78	-0.6
2,984,409	-		IAI47_14120	0.78	+2.9
2,984,419	+		IAI47_14120	0.79	+2.2
2,984,419	+		IAI47_14120	0.79	-0.5
2,984,419	+		IAI47_14120	0.79	+1.3
2,984,420	-		IAI47_14120	0.79	-2.2
2,984,467	+		IAI47_14120	0.83	-0.8
2,984,467	+		IAI47_14120	0.83	-0.4
2,984,468	-		IAI47_14120	0.83	-0.1
2,984,468	-		IAI47_14120	0.83	+3.6
2,984,468	-		IAI47_14120	0.83	-1.8
2,984,468	-		IAI47_14120	0.83	-2.3
2,984,495	+		IAI47_14120	0.85	+1.9
2,984,495	+		IAI47_14120	0.85	-0.7
2,984,495	+		IAI47_14120	0.85	-0.2
2,984,495	+		IAI47_14120	0.85	+0.5
2,984,495	+		IAI47_14120	0.85	+1.4
2,984,495	+		IAI47_14120	0.85	-1.3
2,984,495	+		IAI47_14120	0.85	+0.3
2,984,495	+		IAI47_14120	0.85	+0.9
2,984,495	+		IAI47_14120	0.85	-0.1
2,984,495	+		IAI47_14120	0.85	-2.0
2,984,496	-		IAI47_14120	0.85	+0.5
2,984,496	-		IAI47_14120	0.85	+1.4
2,984,496	-		IAI47_14120	0.85	-0.3
2,984,551	+		IAI47_14120	0.90	-2.6
2,984,551	+		IAI47_14120	0.90	+0.1
2,984,551	+		IAI47_14120	0.90	+0.5
2,984,552	-		IAI47_14120	0.90	+0.7
2,984,553	+		IAI47_14120	0.90	-1.1
2,984,553	+		IAI47_14120	0.90	+0.7
2,984,553	+		IAI47_14120	0.90	-0.5
2,984,553	+		IAI47_14120	0.90	-0.8
2,984,553	+		IAI47_14120	0.90	+0.4
2,984,553	+		IAI47_14120	0.90	+1.2
2,984,553	+		IAI47_14120	0.90	+0.4
2,984,553	+		IAI47_14120	0.90	+0.0
2,984,554	-		IAI47_14120	0.90	-0.9
2,984,554	-		IAI47_14120	0.90	+1.6
2,984,554	-		IAI47_14120	0.90	+0.6
2,984,554	-		IAI47_14120	0.90	+1.3
2,984,554	-		IAI47_14120	0.90	+1.0
2,984,554	-		IAI47_14120	0.90	+1.6
2,984,596	+				+0.1
2,984,597	-				-0.1
2,984,672	+				+1.3
2,984,672	+				-1.3
2,984,672	+				-1.7
2,984,672	+				+1.1
2,984,672	+				-0.0
2,984,750	+				-0.7
2,984,750	+				-1.5
2,984,751	-				+3.3
2,984,751	-				+1.0
2,984,751	-				+1.2
2,984,751	-				+0.4
2,984,919	+		IAI47_14125	0.87	+2.0
2,984,919	+		IAI47_14125	0.87	+1.3
2,984,919	+		IAI47_14125	0.87	+2.2
2,984,919	+		IAI47_14125	0.87	+1.3
2,984,919	+		IAI47_14125	0.87	-1.3
2,984,920	-		IAI47_14125	0.87	+1.2
2,984,920	-		IAI47_14125	0.87	+1.9
2,984,920	-		IAI47_14125	0.87	+0.6
2,984,920	-		IAI47_14125	0.87	-0.3
2,984,920	-		IAI47_14125	0.87	+0.8
2,984,924	+		IAI47_14125	0.89	-0.1
2,984,924	+		IAI47_14125	0.89	+0.2
2,984,924	+		IAI47_14125	0.89	+1.5
2,984,924	+		IAI47_14125	0.89	-0.3
2,984,925	-				-0.6
2,984,925	-				-0.4
2,984,946	-				+1.7
2,984,975	-				+0.9
2,985,008	-				-2.4
2,985,008	-				+0.7
2,985,020	+				-0.8
2,985,020	+				+0.7
2,985,020	+				-1.4
2,985,021	-				-0.1
2,985,021	-				+0.8
2,985,021	-				-0.7
2,985,021	-				-0.7
2,985,054	-				+0.8
2,985,070	-				-0.4
2,985,081	-				+0.2
2,985,081	-				+0.4
2,985,081	-				-0.8
2,985,112	+				+0.6
2,985,113	-				+0.5
2,985,241	-		IAI47_14130	0.15	+0.0
2,985,241	-		IAI47_14130	0.15	+0.8
2,985,248	-		IAI47_14130	0.16	-1.4
2,985,274	-		IAI47_14130	0.19	+1.7
2,985,283	+		IAI47_14130	0.20	-1.8
2,985,284	-		IAI47_14130	0.20	+1.4
2,985,284	-		IAI47_14130	0.20	-1.7
2,985,284	-		IAI47_14130	0.20	-2.0
2,985,284	-		IAI47_14130	0.20	-0.9
2,985,284	-		IAI47_14130	0.20	-0.2
2,985,382	+		IAI47_14130	0.34	+0.7
2,985,382	+		IAI47_14130	0.34	-1.9
2,985,383	-		IAI47_14130	0.34	-2.0
2,985,514	+		IAI47_14130	0.52	+0.5
2,985,514	+		IAI47_14130	0.52	-2.5
2,985,514	+		IAI47_14130	0.52	+0.0
2,985,515	-		IAI47_14130	0.52	-0.8
2,985,515	-		IAI47_14130	0.52	+0.4
2,985,842	-				-1.0
2,985,867	-				-1.5
2,985,867	-				-0.1
2,985,867	-				+0.7
2,985,867	-				-0.9
2,985,884	+				-3.5
2,985,885	-				+1.1
2,985,885	-				-0.6
2,985,885	-				-0.3
2,985,964	+		IAI47_14135	0.12	+0.6
2,985,964	+		IAI47_14135	0.12	-0.8
2,985,964	+		IAI47_14135	0.12	-0.5
2,985,964	+		IAI47_14135	0.12	-1.6
2,985,964	+		IAI47_14135	0.12	-0.3
2,985,964	+		IAI47_14135	0.12	-1.8
2,985,964	+		IAI47_14135	0.12	+1.6
2,985,964	+		IAI47_14135	0.12	+0.5
2,985,964	+		IAI47_14135	0.12	+0.2
2,985,965	-		IAI47_14135	0.12	-1.0
2,985,998	+		IAI47_14135	0.17	+0.2
2,985,999	-		IAI47_14135	0.17	+1.7
2,986,020	+		IAI47_14135	0.20	-1.5
2,986,025	+		IAI47_14135	0.20	-1.4
2,986,025	+		IAI47_14135	0.20	+0.7
2,986,025	+		IAI47_14135	0.20	+0.0
2,986,025	+		IAI47_14135	0.20	+1.2
2,986,026	-		IAI47_14135	0.21	+2.6
2,986,051	+		IAI47_14135	0.24	-0.7
2,986,051	+		IAI47_14135	0.24	+0.6
2,986,051	+		IAI47_14135	0.24	-2.3
2,986,052	-		IAI47_14135	0.24	-0.4
2,986,052	-		IAI47_14135	0.24	-1.8
2,986,052	-		IAI47_14135	0.24	-2.6
2,986,052	-		IAI47_14135	0.24	+2.1
2,986,052	-		IAI47_14135	0.24	-1.8
2,986,058	-		IAI47_14135	0.25	-0.8
2,986,058	-		IAI47_14135	0.25	+0.2
2,986,078	-		IAI47_14135	0.28	+0.7
2,986,078	-		IAI47_14135	0.28	+1.7
2,986,078	-		IAI47_14135	0.28	+0.7
2,986,085	+		IAI47_14135	0.29	+0.2
2,986,086	-		IAI47_14135	0.29	-0.2
2,986,086	-		IAI47_14135	0.29	-1.7
2,986,086	-		IAI47_14135	0.29	-0.8
2,986,086	-		IAI47_14135	0.29	+1.6
2,986,092	-		IAI47_14135	0.30	-1.7
2,986,092	-		IAI47_14135	0.30	-0.7
2,986,092	-		IAI47_14135	0.30	-1.3
2,986,092	-		IAI47_14135	0.30	+0.6
2,986,098	+		IAI47_14135	0.31	+0.2
2,986,098	+		IAI47_14135	0.31	+1.7
2,986,098	+		IAI47_14135	0.31	-2.3
2,986,099	-		IAI47_14135	0.31	+1.3
2,986,099	-		IAI47_14135	0.31	+0.4
2,986,174	-		IAI47_14135	0.42	-0.6
2,986,194	+		IAI47_14135	0.45	+0.4
2,986,195	-		IAI47_14135	0.45	+0.0
2,986,223	+		IAI47_14135	0.49	+0.7
2,986,223	+		IAI47_14135	0.49	-1.0
2,986,223	+		IAI47_14135	0.49	+0.9
2,986,223	+		IAI47_14135	0.49	+1.0
2,986,223	+		IAI47_14135	0.49	-0.9
2,986,223	+		IAI47_14135	0.49	+0.2
2,986,223	+		IAI47_14135	0.49	-2.2
2,986,223	+		IAI47_14135	0.49	+0.0
2,986,223	+		IAI47_14135	0.49	+0.5
2,986,223	+		IAI47_14135	0.49	-2.4
2,986,223	+		IAI47_14135	0.49	+1.5
2,986,223	+		IAI47_14135	0.49	+0.6
2,986,224	-		IAI47_14135	0.49	+1.0
2,986,224	-		IAI47_14135	0.49	-0.6
2,986,224	-		IAI47_14135	0.49	+1.7
2,986,224	-		IAI47_14135	0.49	-1.7
2,986,224	-		IAI47_14135	0.49	-1.9
2,986,224	-		IAI47_14135	0.49	+3.9
2,986,224	-		IAI47_14135	0.49	+0.2
2,986,224	-		IAI47_14135	0.49	-2.6
2,986,224	-		IAI47_14135	0.49	+1.3
2,986,224	-		IAI47_14135	0.49	-0.4
2,986,224	-		IAI47_14135	0.49	-0.7
2,986,224	-		IAI47_14135	0.49	+1.5
2,986,224	-		IAI47_14135	0.49	+0.0
2,986,224	-		IAI47_14135	0.49	+0.9
2,986,224	-		IAI47_14135	0.49	+1.9
2,986,224	-		IAI47_14135	0.49	+0.1
2,986,224	-		IAI47_14135	0.49	+0.0
2,986,237	-		IAI47_14135	0.51	+1.2
2,986,246	-		IAI47_14135	0.52	+1.6
2,986,246	-		IAI47_14135	0.52	+0.0
2,986,246	-		IAI47_14135	0.52	-0.2
2,986,263	+		IAI47_14135	0.55	-1.8
2,986,342	-		IAI47_14135	0.66	-0.6
2,986,342	-		IAI47_14135	0.66	-2.2
2,986,360	+		IAI47_14135	0.69	+1.3
2,986,361	-		IAI47_14135	0.69	+0.3
2,986,361	-		IAI47_14135	0.69	-0.6
2,986,361	-		IAI47_14135	0.69	+0.7
2,986,361	-		IAI47_14135	0.69	+0.7
2,986,361	-		IAI47_14135	0.69	-1.0
2,986,371	-		IAI47_14135	0.70	+1.2
2,986,371	-		IAI47_14135	0.70	+0.1
2,986,477	+		IAI47_14135	0.86	+1.6
2,986,477	+		IAI47_14135	0.86	-0.0
2,986,477	+		IAI47_14135	0.86	-1.8
2,986,478	-		IAI47_14135	0.86	-1.9
2,986,478	-		IAI47_14135	0.86	-2.7
2,986,487	+		IAI47_14135	0.87	+1.6
2,986,487	+		IAI47_14135	0.87	+0.3
2,986,488	-		IAI47_14135	0.87	+0.6
2,986,519	+				+0.0
2,986,546	+				+0.0
2,986,575	+				+1.4
2,986,575	+				+0.2
2,986,575	+				-0.2
2,986,575	+				-0.7
2,986,575	+				+0.5
2,986,575	+				+1.9
2,986,576	-				-1.5
2,986,576	-				-0.6
2,986,576	-				+0.7
2,986,576	-				+0.5
2,986,576	-				-0.1
2,986,576	-				+1.2
2,986,576	-				-0.4
2,986,576	-				+1.7
2,986,576	-				+0.3
2,986,576	-				+1.6
2,986,576	-				-0.3
2,986,583	+				+2.0
2,986,584	-				+0.7
2,986,613	-				+0.7
2,986,655	+				+0.9
2,986,659	+				+0.7
2,986,659	+				+0.8
2,986,659	+				-0.4
2,986,660	-				+0.7
2,986,660	-				+0.7
2,986,660	-				+0.6
2,986,704	+				+0.7
2,986,704	+				-0.7
2,986,704	+				-0.6
2,986,705	-				+1.5
2,986,751	+				-0.6
2,986,751	+				-2.4
2,986,752	-				-1.1
2,986,752	-				+0.1