Strain Fitness in Pantoea sp. MT58 around IAI47_13525

Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,868,074	+		IAI47_13515	0.66	-0.5
2,868,075	-		IAI47_13515	0.66	-0.3
2,868,075	-		IAI47_13515	0.66	-0.6
2,868,100	+		IAI47_13515	0.70	-1.8
2,868,100	+		IAI47_13515	0.70	-0.4
2,868,101	-		IAI47_13515	0.70	+0.5
2,868,101	-		IAI47_13515	0.70	+4.3
2,868,101	-		IAI47_13515	0.70	-0.9
2,868,194	+		IAI47_13515	0.84	+4.3
2,868,194	+		IAI47_13515	0.84	-0.5
2,868,194	+		IAI47_13515	0.84	-0.3
2,868,195	-		IAI47_13515	0.84	-1.0
2,868,195	-		IAI47_13515	0.84	-0.0
2,868,195	-		IAI47_13515	0.84	+0.6
2,868,196	+		IAI47_13515	0.84	-0.5
2,868,196	+		IAI47_13515	0.84	-0.6
2,868,197	-		IAI47_13515	0.84	+1.5
2,868,197	-		IAI47_13515	0.84	-0.4
2,868,260	+				+0.1
2,868,261	-				+0.9
2,868,284	+				+0.7
2,868,288	-				-0.5
2,868,288	-				-0.9
2,868,288	-				+0.7
2,868,288	-				+0.3
2,868,319	-				-2.7
2,868,319	-				+1.0
2,868,323	+				-1.9
2,868,324	-				+0.4
2,868,324	-				-0.6
2,868,331	-				-0.1
2,868,331	-				-1.3
2,868,374	+				-1.3
2,868,374	+				-0.5
2,868,375	-		IAI47_13520	0.10	+1.3
2,868,401	+		IAI47_13520	0.13	-2.7
2,868,401	+		IAI47_13520	0.13	+3.4
2,868,401	+		IAI47_13520	0.13	+0.7
2,868,401	+		IAI47_13520	0.13	-3.1
2,868,401	+		IAI47_13520	0.13	+0.6
2,868,402	-		IAI47_13520	0.14	-1.1
2,868,402	-		IAI47_13520	0.14	+0.4
2,868,402	-		IAI47_13520	0.14	+3.3
2,868,554	-		IAI47_13520	0.34	-1.9
2,868,554	-		IAI47_13520	0.34	-2.0
2,868,731	+		IAI47_13520	0.57	-0.1
2,868,731	+		IAI47_13520	0.57	+0.1
2,868,732	-		IAI47_13520	0.57	+0.7
2,868,732	-		IAI47_13520	0.57	+0.5
2,868,749	-		IAI47_13520	0.60	-2.2
2,868,749	-		IAI47_13520	0.60	-1.8
2,868,786	+		IAI47_13520	0.64	-1.9
2,868,786	+		IAI47_13520	0.64	+1.8
2,868,786	+		IAI47_13520	0.64	+0.1
2,868,786	+		IAI47_13520	0.64	+1.2
2,868,786	+		IAI47_13520	0.64	-0.1
2,868,786	+		IAI47_13520	0.64	+0.3
2,868,787	-		IAI47_13520	0.65	-1.8
2,868,787	-		IAI47_13520	0.65	-1.7
2,868,787	-		IAI47_13520	0.65	+0.6
2,868,787	-		IAI47_13520	0.65	-2.2
2,868,885	+		IAI47_13520	0.78	+0.7
2,868,886	-		IAI47_13520	0.78	-0.8
2,868,886	-		IAI47_13520	0.78	+2.5
2,868,993	+				-0.7
2,868,993	+				-2.0
2,868,993	+				-2.9
2,869,036	+				+0.9
2,869,037	-				-1.7
2,869,037	-				-0.7
2,869,037	-				-0.9
2,869,037	-				+0.9
2,869,079	+				-0.4
2,869,080	-				-1.5
2,869,080	-				+0.3
2,869,109	+				+0.4
2,869,109	+				-0.6
2,869,110	-				+1.5
2,869,110	-				-0.8
2,869,110	-				+0.3
2,869,211	+		IAI47_13525	0.15	+0.7
2,869,211	+		IAI47_13525	0.15	+1.1
2,869,212	-		IAI47_13525	0.15	-0.3
2,869,212	-		IAI47_13525	0.15	-0.2
2,869,344	-		IAI47_13525	0.27	+0.4
2,869,344	-		IAI47_13525	0.27	+1.3
2,869,515	-		IAI47_13525	0.41	-2.0
2,869,699	-		IAI47_13525	0.57	+2.3
2,869,699	-		IAI47_13525	0.57	+1.3
2,869,803	-		IAI47_13525	0.66	-0.3
2,869,814	+		IAI47_13525	0.67	-0.3
2,869,815	-		IAI47_13525	0.67	-0.9
2,869,815	-		IAI47_13525	0.67	+0.7
2,869,815	-		IAI47_13525	0.67	+0.7
2,869,837	+		IAI47_13525	0.69	+1.7
2,869,894	+		IAI47_13525	0.74	-2.2
2,869,894	+		IAI47_13525	0.74	-0.8
2,869,894	+		IAI47_13525	0.74	+1.0
2,869,946	-		IAI47_13525	0.79	-0.3
2,870,013	+		IAI47_13525	0.85	-0.7
2,870,044	+		IAI47_13525	0.87	-0.1
2,870,045	-		IAI47_13525	0.87	-0.5
2,870,045	-		IAI47_13525	0.87	+2.4
2,870,068	+		IAI47_13525	0.89	+0.2
2,870,068	+		IAI47_13525	0.89	+0.3
2,870,068	+		IAI47_13525	0.89	+2.4
2,870,069	-		IAI47_13525	0.89	-2.9
2,870,069	-		IAI47_13525	0.89	-0.0
2,870,069	-		IAI47_13525	0.89	+0.9
2,870,069	-		IAI47_13525	0.89	+0.2
2,870,069	-		IAI47_13525	0.89	+0.9
2,870,069	-		IAI47_13525	0.89	-0.2
2,870,069	-		IAI47_13525	0.89	+2.3
2,870,069	-		IAI47_13525	0.89	+1.7
2,870,069	-		IAI47_13525	0.89	+0.7
2,870,190	+				+1.3
2,870,190	+				+0.8
2,870,190	+				+1.4
2,870,190	+				+0.7
2,870,190	+				-0.3
2,870,191	-				+0.1
2,870,205	+				-1.7
2,870,206	-				-0.2
2,870,284	+				-2.2
2,870,284	+				+0.2
2,870,284	+				+0.6
2,870,284	+				-1.8
2,870,284	+				+0.5
2,870,284	+				-2.2
2,870,285	-				-2.3
2,870,285	-				+0.8
2,870,285	-				+0.7
2,870,285	-				-2.4
2,870,330	-		IAI47_13530	0.14	-2.0
2,870,370	+		IAI47_13530	0.18	-1.5
2,870,395	+		IAI47_13530	0.20	+1.3
2,870,396	-		IAI47_13530	0.20	-0.2
2,870,396	-		IAI47_13530	0.20	+0.1
2,870,450	+		IAI47_13530	0.25	-0.7
2,870,450	+		IAI47_13530	0.25	+1.7
2,870,450	+		IAI47_13530	0.25	+0.1
2,870,450	+		IAI47_13530	0.25	+0.5
2,870,450	+		IAI47_13530	0.25	+0.8
2,870,450	+		IAI47_13530	0.25	-0.1
2,870,450	+		IAI47_13530	0.25	-0.4
2,870,450	+		IAI47_13530	0.25	+0.6
2,870,451	-		IAI47_13530	0.25	+0.1
2,870,451	-		IAI47_13530	0.25	+2.6
2,870,451	-		IAI47_13530	0.25	-0.4
2,870,451	-		IAI47_13530	0.25	+2.5
2,870,451	-		IAI47_13530	0.25	+1.4
2,870,451	-		IAI47_13530	0.25	+1.3
2,870,451	-		IAI47_13530	0.25	-0.2
2,870,451	-		IAI47_13530	0.25	-1.9
2,870,451	-		IAI47_13530	0.25	-1.5
2,870,451	-		IAI47_13530	0.25	+2.8
2,870,451	-		IAI47_13530	0.25	+0.1
2,870,451	-		IAI47_13530	0.25	-3.3
2,870,539	+		IAI47_13530	0.34	-1.0
2,870,540	-		IAI47_13530	0.34	+0.1
2,870,540	-		IAI47_13530	0.34	-0.4
2,870,540	-		IAI47_13530	0.34	+2.3
2,870,540	-		IAI47_13530	0.34	+0.4
2,870,693	-		IAI47_13530	0.49	+3.5
2,870,701	+		IAI47_13530	0.50	+0.8
2,870,718	+		IAI47_13530	0.51	+0.1
2,870,745	+		IAI47_13530	0.54	-2.0
2,870,745	+		IAI47_13530	0.54	-0.5
2,870,745	+		IAI47_13530	0.54	-0.9
2,870,770	+		IAI47_13530	0.56	+0.0
2,870,771	-		IAI47_13530	0.56	-0.4
2,870,778	+		IAI47_13530	0.57	+2.0
2,870,778	+		IAI47_13530	0.57	-0.4
2,870,778	+		IAI47_13530	0.57	+3.0
2,870,778	+		IAI47_13530	0.57	+0.4
2,870,778	+		IAI47_13530	0.57	-1.5
2,870,778	+		IAI47_13530	0.57	-0.9
2,870,778	+		IAI47_13530	0.57	-0.7
2,870,778	+		IAI47_13530	0.57	-0.0
2,870,779	-		IAI47_13530	0.57	-1.7
2,870,779	-		IAI47_13530	0.57	-0.4
2,870,779	-		IAI47_13530	0.57	-1.4
2,870,779	-		IAI47_13530	0.57	+0.2
2,870,781	+		IAI47_13530	0.57	-0.3
2,870,781	+		IAI47_13530	0.57	+0.1
2,870,781	+		IAI47_13530	0.57	+0.3
2,870,782	-		IAI47_13530	0.57	+0.3
2,871,028	+		IAI47_13530	0.81	-1.1
2,871,029	-		IAI47_13530	0.81	+2.2
2,871,051	+		IAI47_13530	0.84	+1.4
2,871,051	+		IAI47_13530	0.84	-0.9
2,871,052	-		IAI47_13530	0.84	+3.3
2,871,052	-		IAI47_13530	0.84	-0.5
2,871,107	+		IAI47_13530	0.89	+0.1
2,871,107	+		IAI47_13530	0.89	+0.1
2,871,107	+		IAI47_13530	0.89	-0.7
2,871,108	-		IAI47_13530	0.89	-0.8
2,871,108	-		IAI47_13530	0.89	+0.9
2,871,108	-		IAI47_13530	0.89	+0.2