Strain Fitness in Pantoea sp. MT58 around IAI47_08760

Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,849,793	-		IAI47_08750	0.53	-0.8
1,849,793	-		IAI47_08750	0.53	+0.1
1,849,825	+		IAI47_08750	0.57	-1.3
1,849,825	+		IAI47_08750	0.57	-1.6
1,849,825	+		IAI47_08750	0.57	+0.8
1,849,826	-		IAI47_08750	0.57	-2.6
1,849,826	-		IAI47_08750	0.57	+0.2
1,849,826	-		IAI47_08750	0.57	-0.1
1,849,833	+		IAI47_08750	0.58	+0.1
1,849,833	+		IAI47_08750	0.58	-0.1
1,849,833	+		IAI47_08750	0.58	-2.2
1,849,833	+		IAI47_08750	0.58	-1.1
1,849,834	-		IAI47_08750	0.58	-1.9
1,849,834	-		IAI47_08750	0.58	+1.2
1,849,834	-		IAI47_08750	0.58	+0.5
1,849,834	-		IAI47_08750	0.58	+1.4
1,849,834	-		IAI47_08750	0.58	+0.2
1,849,834	-		IAI47_08750	0.58	-1.8
1,849,888	+		IAI47_08750	0.65	-0.4
1,849,889	-		IAI47_08750	0.65	-2.1
1,849,889	-		IAI47_08750	0.65	-1.2
1,849,941	+		IAI47_08750	0.71	+0.9
1,849,981	-		IAI47_08750	0.76	-0.3
1,849,981	-		IAI47_08750	0.76	-0.5
1,850,148	-				+3.1
1,850,183	+				+1.4
1,850,184	-				+0.1
1,850,184	-				-1.7
1,850,184	-				+0.7
1,850,194	+				-1.1
1,850,195	-				+0.8
1,850,195	-				+2.1
1,850,195	-				-3.1
1,850,196	+				-1.4
1,850,196	+				+0.9
1,850,196	+				-0.5
1,850,196	+				-0.6
1,850,196	+				-0.9
1,850,196	+				-1.1
1,850,196	+				-0.8
1,850,196	+				+1.9
1,850,196	+				+0.8
1,850,196	+				-0.5
1,850,197	-				+0.8
1,850,197	-				-1.1
1,850,197	-				-2.4
1,850,197	-				+0.4
1,850,197	-				+1.8
1,850,197	-				-0.7
1,850,197	-				-1.3
1,850,197	-				+2.4
1,850,197	-				+0.6
1,850,231	+		IAI47_08755	0.13	-0.3
1,850,231	+		IAI47_08755	0.13	+0.0
1,850,308	-		IAI47_08755	0.30	+0.5
1,850,354	+		IAI47_08755	0.40	+0.6
1,850,359	+		IAI47_08755	0.41	+2.0
1,850,359	+		IAI47_08755	0.41	+0.1
1,850,360	-		IAI47_08755	0.41	-0.6
1,850,360	-		IAI47_08755	0.41	+0.5
1,850,479	+		IAI47_08755	0.67	+0.8
1,850,500	+		IAI47_08755	0.72	+0.8
1,850,500	+		IAI47_08755	0.72	+0.5
1,850,525	+		IAI47_08755	0.77	+1.1
1,850,525	+		IAI47_08755	0.77	-1.1
1,850,526	-		IAI47_08755	0.77	-0.1
1,850,526	-		IAI47_08755	0.77	+0.2
1,850,596	+				-3.3
1,850,597	-				-3.5
1,850,597	-				+0.5
1,850,597	-				+0.6
1,850,597	-				-0.6
1,850,597	-				-2.4
1,850,621	+				+1.5
1,850,621	+				+0.6
1,850,636	+				+4.1
1,850,636	+				+0.9
1,850,637	-				+3.1
1,850,637	-				+1.4
1,850,686	-				-0.8
1,850,746	+				-0.5
1,850,757	-				-0.1
1,850,801	+				+0.6
1,850,801	+				+0.9
1,850,819	+		IAI47_08760	0.12	-3.4
1,850,819	+		IAI47_08760	0.12	-0.5
1,850,819	+		IAI47_08760	0.12	-0.6
1,850,819	+		IAI47_08760	0.12	+0.4
1,850,819	+		IAI47_08760	0.12	-1.2
1,850,819	+		IAI47_08760	0.12	-0.4
1,850,819	+		IAI47_08760	0.12	+0.6
1,850,819	+		IAI47_08760	0.12	-1.5
1,850,820	-		IAI47_08760	0.12	-0.5
1,850,820	-		IAI47_08760	0.12	-1.8
1,850,820	-		IAI47_08760	0.12	+0.0
1,850,820	-		IAI47_08760	0.12	+1.2
1,850,901	-		IAI47_08760	0.21	+0.5
1,850,943	-		IAI47_08760	0.26	-1.3
1,851,059	+		IAI47_08760	0.40	-0.1
1,851,059	+		IAI47_08760	0.40	-2.1
1,851,070	+		IAI47_08760	0.41	+0.1
1,851,071	-		IAI47_08760	0.41	+1.5
1,851,071	-		IAI47_08760	0.41	-1.7
1,851,071	-		IAI47_08760	0.41	-0.8
1,851,083	-		IAI47_08760	0.43	+0.3
1,851,083	-		IAI47_08760	0.43	-0.5
1,851,085	+		IAI47_08760	0.43	+1.7
1,851,111	-		IAI47_08760	0.46	-0.3
1,851,193	-		IAI47_08760	0.56	+1.7
1,851,193	-		IAI47_08760	0.56	+0.7
1,851,193	-		IAI47_08760	0.56	+1.5
1,851,343	+		IAI47_08760	0.74	-0.5
1,851,343	+		IAI47_08760	0.74	+0.7
1,851,343	+		IAI47_08760	0.74	+0.7
1,851,343	+		IAI47_08760	0.74	-0.5
1,851,344	-		IAI47_08760	0.74	-1.7
1,851,344	-		IAI47_08760	0.74	+0.9
1,851,344	-		IAI47_08760	0.74	-2.7
1,851,344	-		IAI47_08760	0.74	+0.2
1,851,344	-		IAI47_08760	0.74	-0.8
1,851,344	-		IAI47_08760	0.74	-0.8
1,851,344	-		IAI47_08760	0.74	+0.3
1,851,356	+		IAI47_08760	0.75	-0.1
1,851,378	+		IAI47_08760	0.78	-0.4
1,851,378	+		IAI47_08760	0.78	-0.8
1,851,379	-		IAI47_08760	0.78	-2.3
1,851,389	+		IAI47_08760	0.79	-1.9
1,851,389	+		IAI47_08760	0.79	+1.5
1,851,389	+		IAI47_08760	0.79	-1.9
1,851,389	+		IAI47_08760	0.79	-1.4
1,851,390	-		IAI47_08760	0.79	-1.7
1,851,437	+		IAI47_08760	0.85	-1.3
1,851,437	+		IAI47_08760	0.85	-1.3
1,851,437	+		IAI47_08760	0.85	-0.8
1,851,437	+		IAI47_08760	0.85	+1.5
1,851,438	-		IAI47_08760	0.85	-2.9
1,851,438	-		IAI47_08760	0.85	+0.5
1,851,438	-		IAI47_08760	0.85	-0.3
1,851,464	+		IAI47_08760	0.88	+2.3
1,851,464	+		IAI47_08760	0.88	-1.7
1,851,464	+		IAI47_08760	0.88	-1.7
1,851,464	+		IAI47_08760	0.88	-1.7
1,851,465	-		IAI47_08760	0.88	+2.3
1,851,465	-		IAI47_08760	0.88	-0.4
1,851,465	-		IAI47_08760	0.88	-0.8
1,851,465	-		IAI47_08760	0.88	-2.7
1,851,506	+				-1.1
1,851,554	+				-0.8
1,851,555	-				-0.3
1,851,555	-				-0.1
1,851,558	-				-0.3
1,851,558	-				+1.5
1,851,639	+				-0.6
1,851,639	+				+0.2
1,851,640	-				+0.6
1,851,649	+				-0.6
1,851,650	-				-1.1
1,851,670	+		IAI47_08765	0.11	-0.3
1,851,670	+		IAI47_08765	0.11	+0.4
1,851,670	+		IAI47_08765	0.11	+0.7
1,851,670	+		IAI47_08765	0.11	-0.1
1,851,670	+		IAI47_08765	0.11	-2.5
1,851,671	-		IAI47_08765	0.11	-1.1
1,851,696	+		IAI47_08765	0.14	-0.8
1,851,696	+		IAI47_08765	0.14	-2.3
1,851,697	-		IAI47_08765	0.14	-0.5
1,851,726	-		IAI47_08765	0.18	+0.3
1,851,752	-		IAI47_08765	0.21	-3.5
1,851,752	-		IAI47_08765	0.21	+0.3
1,851,769	+		IAI47_08765	0.23	-1.0
1,851,769	+		IAI47_08765	0.23	-3.2
1,851,833	+		IAI47_08765	0.31	+2.5
1,851,863	+		IAI47_08765	0.35	-1.9
1,851,864	-		IAI47_08765	0.35	+1.5
1,851,864	-		IAI47_08765	0.35	-1.5
1,851,926	+		IAI47_08765	0.43	-1.5
1,851,932	+		IAI47_08765	0.44	-1.5
1,851,933	-		IAI47_08765	0.44	+0.5
1,851,989	+		IAI47_08765	0.51	-2.1
1,851,990	-		IAI47_08765	0.51	+1.4
1,852,007	+		IAI47_08765	0.53	-2.1
1,852,145	+		IAI47_08765	0.70	-0.7
1,852,145	+		IAI47_08765	0.70	-2.9
1,852,232	+		IAI47_08765	0.81	-0.1
1,852,232	+		IAI47_08765	0.81	+0.1
1,852,232	+		IAI47_08765	0.81	-0.3
1,852,232	+		IAI47_08765	0.81	-1.1
1,852,247	+		IAI47_08765	0.83	+0.5
1,852,274	+		IAI47_08765	0.86	-1.8
1,852,274	+		IAI47_08765	0.86	-1.3
1,852,275	-		IAI47_08765	0.87	+1.5
1,852,275	-		IAI47_08765	0.87	-1.2
1,852,275	-		IAI47_08765	0.87	+0.5
1,852,275	-		IAI47_08765	0.87	-0.8
1,852,375	-				-2.3
1,852,385	+				+2.0
1,852,385	+				+0.7
1,852,386	-				-0.4
1,852,386	-				-0.6
1,852,386	-				-0.4
1,852,386	-				-1.4
1,852,386	-				+0.9
1,852,386	-				+0.6
1,852,454	+				-0.9
1,852,523	+				+0.5
1,852,524	-				-1.1
1,852,524	-				+1.5
1,852,556	+		IAI47_08770	0.11	+0.2
1,852,557	-		IAI47_08770	0.12	+1.0