Strain Fitness in Pantoea sp. MT58 around IAI47_06855

Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,430,934	+				+0.5
1,430,934	+				+3.0
1,430,935	-				+0.4
1,430,935	-				+2.0
1,430,936	+				-0.2
1,430,954	+				-2.7
1,430,955	-				+0.9
1,430,972	+				+0.0
1,430,984	+				-0.7
1,430,998	+				+0.3
1,431,059	+				+0.3
1,431,059	+				-1.5
1,431,059	+				+2.4
1,431,059	+				-1.8
1,431,059	+				-3.4
1,431,059	+				+1.6
1,431,059	+				-0.5
1,431,059	+				+0.0
1,431,059	+				-0.7
1,431,059	+				-0.2
1,431,060	-				+0.9
1,431,060	-				-0.6
1,431,060	-				+0.7
1,431,060	-				+0.0
1,431,060	-				-1.4
1,431,060	-				-1.1
1,431,060	-				-0.2
1,431,060	-				-1.2
1,431,060	-				-1.4
1,431,091	+				-0.6
1,431,117	+				-0.2
1,431,117	+				+1.5
1,431,159	-				-0.3
1,431,216	+				-2.3
1,431,217	-				+0.9
1,431,217	-				-0.6
1,431,217	-				-1.2
1,431,267	+		IAI47_06850	0.16	+1.2
1,431,267	+		IAI47_06850	0.16	-0.4
1,431,267	+		IAI47_06850	0.16	+0.4
1,431,311	+		IAI47_06850	0.22	+0.2
1,431,311	+		IAI47_06850	0.22	+0.4
1,431,311	+		IAI47_06850	0.22	-0.1
1,431,311	+		IAI47_06850	0.22	+0.8
1,431,311	+		IAI47_06850	0.22	-2.0
1,431,311	+		IAI47_06850	0.22	-1.4
1,431,312	-		IAI47_06850	0.22	-2.3
1,431,312	-		IAI47_06850	0.22	-0.3
1,431,312	-		IAI47_06850	0.22	-0.1
1,431,312	-		IAI47_06850	0.22	+0.2
1,431,397	+		IAI47_06850	0.34	+1.9
1,431,398	-		IAI47_06850	0.34	+2.1
1,431,554	+		IAI47_06850	0.56	-0.6
1,431,554	+		IAI47_06850	0.56	+2.0
1,431,554	+		IAI47_06850	0.56	-0.8
1,431,554	+		IAI47_06850	0.56	-1.5
1,431,554	+		IAI47_06850	0.56	+2.8
1,431,554	+		IAI47_06850	0.56	-1.5
1,431,554	+		IAI47_06850	0.56	-1.7
1,431,554	+		IAI47_06850	0.56	+1.6
1,431,554	+		IAI47_06850	0.56	-0.7
1,431,555	-		IAI47_06850	0.56	-1.1
1,431,555	-		IAI47_06850	0.56	-0.5
1,431,555	-		IAI47_06850	0.56	+3.3
1,431,555	-		IAI47_06850	0.56	+0.3
1,431,555	-		IAI47_06850	0.56	-0.8
1,431,574	+		IAI47_06850	0.59	-1.2
1,431,575	-		IAI47_06850	0.59	-0.2
1,431,575	-		IAI47_06850	0.59	-0.4
1,431,604	-		IAI47_06850	0.63	-2.4
1,431,618	+		IAI47_06850	0.65	+0.8
1,431,622	-		IAI47_06850	0.66	-0.4
1,431,689	-		IAI47_06850	0.75	+0.4
1,431,728	+		IAI47_06850	0.81	+0.1
1,431,728	+		IAI47_06850	0.81	+0.3
1,431,728	+		IAI47_06850	0.81	-3.0
1,431,728	+		IAI47_06850	0.81	-1.5
1,431,729	-		IAI47_06850	0.81	-0.0
1,431,729	-		IAI47_06850	0.81	-2.8
1,431,766	-		IAI47_06850	0.86	-0.5
1,431,770	+		IAI47_06850	0.87	-1.0
1,431,771	-		IAI47_06850	0.87	+0.6
1,431,771	-		IAI47_06850	0.87	+0.8
1,431,771	-		IAI47_06850	0.87	-1.0
1,431,771	-		IAI47_06850	0.87	-0.4
1,431,788	+		IAI47_06850	0.89	-0.1
1,431,788	+		IAI47_06850	0.89	+1.3
1,431,789	-		IAI47_06850	0.89	-0.7
1,431,864	+				-1.0
1,431,864	+				+0.4
1,431,864	+				+0.2
1,431,865	-				+0.2
1,431,865	-				+0.1
1,431,865	-				+0.6
1,431,865	-				+0.4
1,431,865	-				-1.2
1,431,865	-				-1.7
1,431,872	+				-0.7
1,431,872	+				+0.0
1,431,873	-				+1.6
1,431,887	+				-0.4
1,431,887	+				-2.5
1,431,887	+				-1.0
1,431,887	+				-1.4
1,431,887	+				-0.4
1,431,887	+				-0.2
1,431,888	-				-1.1
1,431,888	-				+0.5
1,431,888	-				+0.6
1,431,898	+				+1.3
1,431,920	-				+0.9
1,432,121	+		IAI47_06855	0.18	+1.0
1,432,122	-		IAI47_06855	0.18	+0.2
1,432,161	-		IAI47_06855	0.21	+0.3
1,432,192	+		IAI47_06855	0.23	+0.7
1,432,192	+		IAI47_06855	0.23	-1.4
1,432,192	+		IAI47_06855	0.23	+0.3
1,432,192	+		IAI47_06855	0.23	-3.1
1,432,192	+		IAI47_06855	0.23	-1.0
1,432,193	-		IAI47_06855	0.23	+0.6
1,432,193	-		IAI47_06855	0.23	+0.9
1,432,193	-		IAI47_06855	0.23	+0.6
1,432,193	-		IAI47_06855	0.23	+1.9
1,432,275	-		IAI47_06855	0.29	+1.0
1,432,530	+		IAI47_06855	0.47	+0.2
1,432,531	-		IAI47_06855	0.48	+0.7
1,432,582	-		IAI47_06855	0.51	+0.2
1,432,743	+		IAI47_06855	0.63	+0.0
1,432,792	-		IAI47_06855	0.66	+2.1
1,432,794	+		IAI47_06855	0.66	+1.0
1,432,794	+		IAI47_06855	0.66	-0.1
1,432,795	-		IAI47_06855	0.67	+0.9
1,432,851	+		IAI47_06855	0.71	-0.4
1,432,851	+		IAI47_06855	0.71	-2.0
1,432,851	+		IAI47_06855	0.71	+0.1
1,432,852	-		IAI47_06855	0.71	+0.5
1,432,852	-		IAI47_06855	0.71	+1.4
1,432,923	+		IAI47_06855	0.76	-1.1
1,432,923	+		IAI47_06855	0.76	-0.0
1,432,923	+		IAI47_06855	0.76	-0.8
1,432,923	+		IAI47_06855	0.76	+1.8
1,432,924	-		IAI47_06855	0.76	-0.4
1,432,924	-		IAI47_06855	0.76	+0.6
1,432,924	-		IAI47_06855	0.76	-0.4
1,432,924	-		IAI47_06855	0.76	+1.1
1,432,925	+		IAI47_06855	0.76	+1.6
1,432,925	+		IAI47_06855	0.76	+1.6
1,432,925	+		IAI47_06855	0.76	+2.9
1,432,925	+		IAI47_06855	0.76	+0.6
1,432,925	+		IAI47_06855	0.76	-0.2
1,432,926	-		IAI47_06855	0.76	+0.6
1,432,926	-		IAI47_06855	0.76	+1.0
1,432,926	-		IAI47_06855	0.76	+1.2
1,432,926	-		IAI47_06855	0.76	+2.0
1,432,926	-		IAI47_06855	0.76	-1.1
1,432,926	-		IAI47_06855	0.76	+1.6
1,432,926	-		IAI47_06855	0.76	-1.1
1,432,926	-		IAI47_06855	0.76	-0.0
1,432,973	-		IAI47_06855	0.79	+2.5
1,433,019	+		IAI47_06855	0.83	+1.4
1,433,020	-		IAI47_06855	0.83	+0.5
1,433,072	+		IAI47_06855	0.86	-1.7
1,433,072	+		IAI47_06855	0.86	+1.6
1,433,073	-		IAI47_06855	0.87	-0.1
1,433,073	-		IAI47_06855	0.87	+0.5
1,433,105	-		IAI47_06855	0.89	+0.2
1,433,128	-				+0.4
1,433,132	+				-1.8
1,433,132	+				+0.9
1,433,133	-				+0.6
1,433,133	-				-0.1
1,433,133	-				+0.7
1,433,202	+				-3.2
1,433,217	+				-0.1
1,433,250	+				-1.2
1,433,250	+				+1.9
1,433,250	+				-1.2
1,433,250	+				+0.4
1,433,251	-				+0.6
1,433,251	-				+2.6
1,433,251	-				+0.8
1,433,251	-				-0.9
1,433,339	+				-0.4
1,433,340	-				-1.9
1,433,340	-				-0.3
1,433,359	+				-3.5
1,433,359	+				-0.0
1,433,359	+				+1.0
1,433,359	+				-0.4
1,433,359	+				-1.2
1,433,360	-				+2.5
1,433,360	-				+0.6
1,433,363	+				+0.4
1,433,363	+				-1.5
1,433,363	+				-2.7
1,433,363	+				+0.3
1,433,363	+				-0.7
1,433,363	+				+1.1
1,433,364	-				-0.9
1,433,364	-				+2.1
1,433,365	+				-2.0
1,433,365	+				-1.8
1,433,366	-				+0.0
1,433,366	-				+2.3
1,433,366	-				+1.5
1,433,366	-				+1.1
1,433,366	-				+0.6
1,433,366	-				-3.1
1,433,366	-				-0.3
1,433,366	-				+1.3
1,433,369	+				+0.4
1,433,369	+				+2.6
1,433,369	+				-0.8
1,433,369	+				-0.5
1,433,369	+				+0.4
1,433,370	-				+0.4
1,433,370	-				+2.8
1,433,471	+		IAI47_06860	0.15	+0.6
1,433,471	+		IAI47_06860	0.15	+0.6
1,433,471	+		IAI47_06860	0.15	-0.7
1,433,472	-		IAI47_06860	0.15	+0.1
1,433,472	-		IAI47_06860	0.15	-0.1
1,433,472	-		IAI47_06860	0.15	+1.3
1,433,472	-		IAI47_06860	0.15	-1.2
1,433,472	-		IAI47_06860	0.15	-2.1
1,433,472	-		IAI47_06860	0.15	+1.4
1,433,472	-		IAI47_06860	0.15	-0.0
1,433,472	-		IAI47_06860	0.15	+1.1
1,433,537	+		IAI47_06860	0.20	+1.3
1,433,537	+		IAI47_06860	0.20	+1.1
1,433,537	+		IAI47_06860	0.20	-0.7
1,433,538	-		IAI47_06860	0.20	+0.1
1,433,692	+		IAI47_06860	0.31	-0.4
1,433,692	+		IAI47_06860	0.31	-1.2
1,433,715	+		IAI47_06860	0.33	+0.3
1,433,715	+		IAI47_06860	0.33	-0.7
1,433,732	+		IAI47_06860	0.34	+0.3
1,433,732	+		IAI47_06860	0.34	+0.0
1,433,782	+		IAI47_06860	0.37	+1.6
1,433,782	+		IAI47_06860	0.37	-1.9
1,433,783	-		IAI47_06860	0.37	-1.2
1,433,807	+		IAI47_06860	0.39	+0.1
1,433,816	+		IAI47_06860	0.40	+0.3
1,433,816	+		IAI47_06860	0.40	-2.7
1,433,816	+		IAI47_06860	0.40	-1.5
1,433,817	-		IAI47_06860	0.40	-1.8
1,433,817	-		IAI47_06860	0.40	-0.1
1,433,817	-		IAI47_06860	0.40	+2.0
1,433,849	+		IAI47_06860	0.42	-0.6
1,433,875	+		IAI47_06860	0.44	-1.4
1,433,876	-		IAI47_06860	0.44	-0.5
1,433,915	+		IAI47_06860	0.47	-0.5
1,433,915	+		IAI47_06860	0.47	+0.2
1,433,915	+		IAI47_06860	0.47	-1.3
1,433,916	-		IAI47_06860	0.47	+0.0
1,433,916	-		IAI47_06860	0.47	+1.5
1,433,934	+		IAI47_06860	0.48	-2.2
1,433,934	+		IAI47_06860	0.48	-0.2
1,433,934	+		IAI47_06860	0.48	-0.5
1,433,934	+		IAI47_06860	0.48	+0.2
1,433,934	+		IAI47_06860	0.48	+0.5
1,433,935	-		IAI47_06860	0.48	-0.5
1,433,935	-		IAI47_06860	0.48	-2.5
1,433,935	-		IAI47_06860	0.48	+0.3
1,433,935	-		IAI47_06860	0.48	+0.5
1,433,941	+		IAI47_06860	0.49	+3.2
1,433,941	+		IAI47_06860	0.49	+3.6
1,433,941	+		IAI47_06860	0.49	-0.0
1,433,941	+		IAI47_06860	0.49	+0.6
1,433,941	+		IAI47_06860	0.49	+0.7
1,434,100	+		IAI47_06860	0.60	+0.9
1,434,101	-		IAI47_06860	0.60	+0.7
1,434,101	-		IAI47_06860	0.60	-0.6
1,434,101	-		IAI47_06860	0.60	+0.4
1,434,101	-		IAI47_06860	0.60	-0.4
1,434,101	-		IAI47_06860	0.60	+0.6
1,434,184	+		IAI47_06860	0.66	-1.9
1,434,184	+		IAI47_06860	0.66	-1.0
1,434,185	-		IAI47_06860	0.66	+1.1
1,434,185	-		IAI47_06860	0.66	+1.4
1,434,185	-		IAI47_06860	0.66	-1.5
1,434,189	+		IAI47_06860	0.66	+1.2
1,434,189	+		IAI47_06860	0.66	+0.8
1,434,189	+		IAI47_06860	0.66	-2.0
1,434,189	+		IAI47_06860	0.66	-1.2
1,434,189	+		IAI47_06860	0.66	+0.5
1,434,189	+		IAI47_06860	0.66	-0.1
1,434,189	+		IAI47_06860	0.66	+1.5
1,434,189	+		IAI47_06860	0.66	+2.1
1,434,189	+		IAI47_06860	0.66	-0.4
1,434,189	+		IAI47_06860	0.66	-1.8
1,434,190	-		IAI47_06860	0.66	+0.5
1,434,190	-		IAI47_06860	0.66	-0.9
1,434,192	+		IAI47_06860	0.67	-0.2
1,434,193	-		IAI47_06860	0.67	-0.7
1,434,193	-		IAI47_06860	0.67	-0.6