Experiment: Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03665 and IAI47_03670 are separated by 192 nucleotides IAI47_03670 and IAI47_03675 are separated by 64 nucleotides
IAI47_03665: IAI47_03665 - agmatinase, at 764,271 to 765,191
_03665
IAI47_03670: IAI47_03670 - DUF937 domain-containing protein, at 765,384 to 765,794
_03670
IAI47_03675: IAI47_03675 - M48 family metallopeptidase, at 765,859 to 766,617
_03675
Position (kb) 765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 764.551 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.697 kb on - strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.727 kb on - strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.777 kb on + strand, within IAI47_03665 at 764.792 kb on - strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 765.032 kb on + strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.108 kb on + strand at 765.108 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.159 kb on - strand at 765.159 kb on - strand at 765.189 kb on + strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.242 kb on - strand at 765.242 kb on - strand at 765.346 kb on + strand at 765.356 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.415 kb on + strand at 765.416 kb on - strand at 765.492 kb on - strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.636 kb on - strand, within IAI47_03670 at 765.653 kb on + strand, within IAI47_03670 at 765.681 kb on - strand, within IAI47_03670 at 765.722 kb on + strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.749 kb on + strand, within IAI47_03670 at 765.750 kb on - strand, within IAI47_03670 at 765.760 kb on + strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.793 kb on - strand at 765.793 kb on - strand at 765.818 kb on + strand at 765.819 kb on - strand at 765.851 kb on - strand at 765.851 kb on - strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 766.003 kb on - strand, within IAI47_03675 at 766.003 kb on - strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.029 kb on - strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.201 kb on - strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.293 kb on + strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.413 kb on - strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.467 kb on + strand, within IAI47_03675 at 766.468 kb on - strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.514 kb on + strand, within IAI47_03675 at 766.515 kb on - strand, within IAI47_03675 at 766.545 kb on + strand at 766.546 kb on - strand at 766.552 kb on + strand at 766.553 kb on - strand at 766.595 kb on - strand at 766.595 kb on - strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.633 kb on + strand at 766.634 kb on - strand at 766.634 kb on - strand at 766.641 kb on + strand at 766.641 kb on + strand at 766.677 kb on + strand at 766.677 kb on + strand at 766.690 kb on + strand at 766.691 kb on - strand at 766.691 kb on - strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.715 kb on + strand at 766.764 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 764,551 - IAI47_03665 0.30 -1.3 764,653 - IAI47_03665 0.41 -1.9 764,653 - IAI47_03665 0.41 -3.6 764,653 - IAI47_03665 0.41 +1.8 764,657 + IAI47_03665 0.42 +0.8 764,657 + IAI47_03665 0.42 +0.7 764,657 + IAI47_03665 0.42 +0.2 764,657 + IAI47_03665 0.42 +1.8 764,658 - IAI47_03665 0.42 +0.6 764,658 - IAI47_03665 0.42 +0.3 764,658 - IAI47_03665 0.42 -0.7 764,658 - IAI47_03665 0.42 +0.1 764,696 + IAI47_03665 0.46 -3.2 764,696 + IAI47_03665 0.46 -0.2 764,696 + IAI47_03665 0.46 -0.6 764,697 - IAI47_03665 0.46 -1.8 764,726 + IAI47_03665 0.49 -2.4 764,726 + IAI47_03665 0.49 -1.0 764,727 - IAI47_03665 0.50 -0.8 764,736 + IAI47_03665 0.50 -1.9 764,736 + IAI47_03665 0.50 -0.5 764,736 + IAI47_03665 0.50 -2.0 764,737 - IAI47_03665 0.51 -0.2 764,737 - IAI47_03665 0.51 -2.5 764,737 - IAI47_03665 0.51 -2.6 764,737 - IAI47_03665 0.51 +0.4 764,777 + IAI47_03665 0.55 -0.3 764,792 - IAI47_03665 0.57 -1.0 764,949 + IAI47_03665 0.74 -0.5 764,949 + IAI47_03665 0.74 -3.7 764,950 - IAI47_03665 0.74 -1.7 764,950 - IAI47_03665 0.74 +1.8 764,950 - IAI47_03665 0.74 -2.6 764,950 - IAI47_03665 0.74 +0.8 764,950 - IAI47_03665 0.74 -0.2 765,032 + IAI47_03665 0.83 -0.2 765,033 - IAI47_03665 0.83 +2.8 765,033 - IAI47_03665 0.83 -0.2 765,108 + +1.1 765,108 + +0.8 765,158 + -0.6 765,158 + +0.6 765,158 + -0.8 765,158 + -2.5 765,159 - +1.2 765,159 - +2.0 765,189 + +0.5 765,190 - -1.7 765,190 - -0.9 765,190 - -2.1 765,242 - +1.4 765,242 - -0.8 765,346 + +1.7 765,356 + -0.8 765,358 + -3.6 765,358 + +1.2 765,358 + +0.2 765,359 - -2.7 765,359 - -0.0 765,359 - +1.6 765,415 + -1.9 765,416 - +0.6 765,492 - IAI47_03670 0.26 -1.4 765,619 + IAI47_03670 0.57 -0.8 765,619 + IAI47_03670 0.57 -1.7 765,619 + IAI47_03670 0.57 -0.1 765,620 - IAI47_03670 0.57 +0.6 765,620 - IAI47_03670 0.57 -0.6 765,620 - IAI47_03670 0.57 -2.0 765,620 - IAI47_03670 0.57 -2.3 765,636 - IAI47_03670 0.61 -0.5 765,653 + IAI47_03670 0.65 -1.4 765,681 - IAI47_03670 0.72 +0.5 765,722 + IAI47_03670 0.82 -0.4 765,723 - IAI47_03670 0.82 -0.5 765,723 - IAI47_03670 0.82 -0.9 765,723 - IAI47_03670 0.82 +2.3 765,749 + IAI47_03670 0.89 +0.1 765,750 - IAI47_03670 0.89 +2.1 765,760 + +0.4 765,761 - -1.2 765,761 - -0.7 765,761 - +1.3 765,781 + -0.5 765,781 + -0.4 765,781 + -0.8 765,793 - -1.2 765,793 - -2.1 765,818 + +1.0 765,819 - -0.5 765,851 - -0.2 765,851 - +0.7 765,860 + -2.7 765,860 + +2.7 765,860 + +1.1 765,861 - +1.4 765,861 - +0.5 765,861 - +2.0 765,882 + +0.2 765,882 + -0.7 765,882 + +0.1 765,882 + +1.5 765,882 + +0.8 765,882 + -0.2 765,883 - -1.0 765,883 - +1.2 765,883 - -0.4 765,883 - +1.8 765,883 - -0.2 765,883 - -0.3 765,883 - -0.7 765,883 - +0.3 766,003 - IAI47_03675 0.19 +1.4 766,003 - IAI47_03675 0.19 -0.7 766,028 + IAI47_03675 0.22 +1.3 766,028 + IAI47_03675 0.22 -0.2 766,028 + IAI47_03675 0.22 +0.6 766,028 + IAI47_03675 0.22 -2.9 766,029 - IAI47_03675 0.22 +1.3 766,034 + IAI47_03675 0.23 +1.1 766,034 + IAI47_03675 0.23 -0.1 766,034 + IAI47_03675 0.23 -0.9 766,034 + IAI47_03675 0.23 +2.4 766,034 + IAI47_03675 0.23 +2.2 766,034 + IAI47_03675 0.23 -1.2 766,035 - IAI47_03675 0.23 -0.8 766,035 - IAI47_03675 0.23 +1.5 766,035 - IAI47_03675 0.23 -0.2 766,035 - IAI47_03675 0.23 +0.9 766,035 - IAI47_03675 0.23 -0.5 766,035 - IAI47_03675 0.23 +2.4 766,035 - IAI47_03675 0.23 +1.4 766,176 - IAI47_03675 0.42 -0.0 766,176 - IAI47_03675 0.42 +1.0 766,176 - IAI47_03675 0.42 +1.4 766,176 - IAI47_03675 0.42 +1.0 766,194 + IAI47_03675 0.44 -1.3 766,194 + IAI47_03675 0.44 -1.8 766,195 - IAI47_03675 0.44 +0.8 766,195 - IAI47_03675 0.44 +1.2 766,195 - IAI47_03675 0.44 +2.5 766,200 + IAI47_03675 0.45 +1.1 766,200 + IAI47_03675 0.45 +0.3 766,200 + IAI47_03675 0.45 +0.3 766,200 + IAI47_03675 0.45 -2.5 766,201 - IAI47_03675 0.45 +1.2 766,266 + IAI47_03675 0.54 +0.2 766,266 + IAI47_03675 0.54 -4.2 766,267 - IAI47_03675 0.54 -0.7 766,267 - IAI47_03675 0.54 +0.2 766,267 - IAI47_03675 0.54 -1.8 766,267 - IAI47_03675 0.54 +0.7 766,284 - IAI47_03675 0.56 -0.4 766,284 - IAI47_03675 0.56 +1.3 766,293 + IAI47_03675 0.57 +0.3 766,294 - IAI47_03675 0.57 +0.4 766,294 - IAI47_03675 0.57 -0.4 766,338 - IAI47_03675 0.63 -1.2 766,338 - IAI47_03675 0.63 +1.4 766,344 + IAI47_03675 0.64 +0.6 766,344 + IAI47_03675 0.64 +0.2 766,344 + IAI47_03675 0.64 +0.3 766,345 - IAI47_03675 0.64 +0.2 766,345 - IAI47_03675 0.64 +1.1 766,345 - IAI47_03675 0.64 +2.1 766,346 + IAI47_03675 0.64 -0.0 766,346 + IAI47_03675 0.64 -0.8 766,346 + IAI47_03675 0.64 -1.6 766,346 + IAI47_03675 0.64 -2.7 766,346 + IAI47_03675 0.64 -1.4 766,347 - IAI47_03675 0.64 -2.4 766,347 - IAI47_03675 0.64 -1.0 766,347 - IAI47_03675 0.64 +1.4 766,347 - IAI47_03675 0.64 -0.1 766,347 - IAI47_03675 0.64 -1.2 766,368 + IAI47_03675 0.67 -0.2 766,368 + IAI47_03675 0.67 +0.5 766,368 + IAI47_03675 0.67 -3.7 766,368 + IAI47_03675 0.67 +0.3 766,368 + IAI47_03675 0.67 +0.2 766,369 - IAI47_03675 0.67 +0.2 766,369 - IAI47_03675 0.67 +2.1 766,369 - IAI47_03675 0.67 +0.1 766,369 - IAI47_03675 0.67 -1.0 766,369 - IAI47_03675 0.67 -1.3 766,371 + IAI47_03675 0.67 -0.5 766,371 + IAI47_03675 0.67 -0.2 766,372 - IAI47_03675 0.68 +0.6 766,372 - IAI47_03675 0.68 +0.6 766,396 - IAI47_03675 0.71 +1.1 766,396 - IAI47_03675 0.71 -0.4 766,396 - IAI47_03675 0.71 -0.5 766,412 + IAI47_03675 0.73 +2.0 766,412 + IAI47_03675 0.73 +0.8 766,413 - IAI47_03675 0.73 +0.9 766,440 + IAI47_03675 0.77 -0.4 766,440 + IAI47_03675 0.77 +0.2 766,440 + IAI47_03675 0.77 +0.8 766,440 + IAI47_03675 0.77 -1.9 766,441 - IAI47_03675 0.77 +0.5 766,441 - IAI47_03675 0.77 -0.7 766,467 + IAI47_03675 0.80 -0.8 766,468 - IAI47_03675 0.80 -0.2 766,483 + IAI47_03675 0.82 -1.5 766,483 + IAI47_03675 0.82 +0.2 766,484 - IAI47_03675 0.82 +1.5 766,484 - IAI47_03675 0.82 -2.6 766,503 + IAI47_03675 0.85 -1.7 766,503 + IAI47_03675 0.85 +0.5 766,503 + IAI47_03675 0.85 +0.3 766,503 + IAI47_03675 0.85 +3.8 766,504 - IAI47_03675 0.85 -0.7 766,504 - IAI47_03675 0.85 -0.2 766,505 + IAI47_03675 0.85 +0.8 766,505 + IAI47_03675 0.85 -1.2 766,505 + IAI47_03675 0.85 -0.6 766,505 + IAI47_03675 0.85 +0.8 766,506 - IAI47_03675 0.85 +1.2 766,506 - IAI47_03675 0.85 +0.9 766,506 - IAI47_03675 0.85 +0.3 766,506 - IAI47_03675 0.85 +2.0 766,514 + IAI47_03675 0.86 -1.0 766,515 - IAI47_03675 0.86 -0.5 766,545 + +1.4 766,546 - -0.2 766,552 + -0.3 766,553 - +1.8 766,595 - +1.0 766,595 - -0.4 766,622 + +1.3 766,623 - -1.7 766,633 + +0.4 766,634 - +0.6 766,634 - +2.5 766,641 + -0.5 766,641 + +0.3 766,677 + +0.1 766,677 + -0.8 766,690 + -0.3 766,691 - +0.3 766,691 - +0.6 766,692 + -0.0 766,692 + +1.5 766,692 + -0.2 766,692 + -1.3 766,693 - +1.6 766,693 - +0.2 766,693 - +0.5 766,693 - -0.8 766,693 - +0.7 766,693 - -1.7 766,715 + -1.4 766,764 + +0.4 766,773 + -2.6 766,773 + -1.2 766,773 + -0.1 766,773 + +0.2 766,773 + -0.7 766,774 - +1.2 766,774 - -1.1 766,774 - -1.7
Or see this region's nucleotide sequence