Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3388 and Dsui_3389 are separated by 135 nucleotides Dsui_3389 and Dsui_3390 are separated by 19 nucleotides Dsui_3390 and Dsui_3391 are separated by 24 nucleotides Dsui_3391 and Dsui_3392 are separated by 131 nucleotides
Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627
_3388
Dsui_3389: Dsui_3389 - enoyl-CoA hydratase/carnithine racemase, at 3,633,763 to 3,634,542
_3389
Dsui_3390: Dsui_3390 - hypothetical protein, at 3,634,562 to 3,635,101
_3390
Dsui_3391: Dsui_3391 - putative glutamine amidotransferase, at 3,635,126 to 3,635,905
_3391
Dsui_3392: Dsui_3392 - carboxylate-amine ligase, YbdK family, at 3,636,037 to 3,637,161
_3392
Position (kb)
3634
3635
3636 Strain fitness (log2 ratio)
-2
-1
0
1 at 3633.632 kb on - strand at 3633.740 kb on - strand at 3633.956 kb on + strand, within Dsui_3389 at 3634.002 kb on - strand, within Dsui_3389 at 3634.063 kb on - strand, within Dsui_3389 at 3634.073 kb on - strand at 3634.120 kb on + strand, within Dsui_3389 at 3634.181 kb on + strand, within Dsui_3389 at 3634.203 kb on - strand, within Dsui_3389 at 3634.346 kb on - strand, within Dsui_3389 at 3634.453 kb on - strand, within Dsui_3389 at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.529 kb on + strand at 3634.529 kb on + strand at 3634.542 kb on + strand at 3634.644 kb on - strand, within Dsui_3390 at 3634.670 kb on + strand, within Dsui_3390 at 3634.688 kb on - strand, within Dsui_3390 at 3634.696 kb on + strand, within Dsui_3390 at 3634.697 kb on - strand, within Dsui_3390 at 3634.742 kb on - strand, within Dsui_3390 at 3634.749 kb on + strand at 3634.757 kb on - strand, within Dsui_3390 at 3634.761 kb on + strand, within Dsui_3390 at 3634.761 kb on + strand, within Dsui_3390 at 3634.761 kb on + strand at 3634.769 kb on - strand, within Dsui_3390 at 3634.795 kb on - strand, within Dsui_3390 at 3634.805 kb on - strand, within Dsui_3390 at 3634.828 kb on + strand, within Dsui_3390 at 3634.828 kb on + strand, within Dsui_3390 at 3634.836 kb on - strand, within Dsui_3390 at 3634.876 kb on - strand, within Dsui_3390 at 3634.886 kb on - strand, within Dsui_3390 at 3634.923 kb on + strand at 3634.926 kb on - strand, within Dsui_3390 at 3634.931 kb on - strand, within Dsui_3390 at 3634.941 kb on - strand, within Dsui_3390 at 3635.000 kb on + strand at 3635.040 kb on + strand, within Dsui_3390 at 3635.041 kb on - strand, within Dsui_3390 at 3635.048 kb on - strand at 3635.048 kb on - strand at 3635.081 kb on - strand at 3635.110 kb on - strand at 3635.110 kb on - strand at 3635.110 kb on - strand at 3635.148 kb on - strand at 3635.178 kb on + strand at 3635.186 kb on - strand at 3635.193 kb on + strand at 3635.205 kb on - strand, within Dsui_3391 at 3635.265 kb on + strand, within Dsui_3391 at 3635.273 kb on - strand, within Dsui_3391 at 3635.378 kb on - strand, within Dsui_3391 at 3635.412 kb on + strand, within Dsui_3391 at 3635.420 kb on - strand, within Dsui_3391 at 3635.434 kb on - strand, within Dsui_3391 at 3635.503 kb on - strand, within Dsui_3391 at 3635.619 kb on + strand at 3635.708 kb on - strand, within Dsui_3391 at 3635.728 kb on + strand at 3635.728 kb on + strand at 3635.733 kb on + strand, within Dsui_3391 at 3635.741 kb on - strand, within Dsui_3391 at 3635.748 kb on + strand, within Dsui_3391 at 3635.770 kb on - strand, within Dsui_3391 at 3635.806 kb on + strand at 3635.814 kb on - strand, within Dsui_3391 at 3635.867 kb on - strand at 3635.905 kb on + strand at 3635.914 kb on - strand at 3635.967 kb on - strand at 3636.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 3,633,632 - -0.5 3,633,740 - +0.5 3,633,956 + Dsui_3389 0.25 -2.5 3,634,002 - Dsui_3389 0.31 +0.5 3,634,063 - Dsui_3389 0.38 +0.5 3,634,073 - +0.5 3,634,120 + Dsui_3389 0.46 -0.5 3,634,181 + Dsui_3389 0.54 -1.8 3,634,203 - Dsui_3389 0.56 -2.3 3,634,346 - Dsui_3389 0.75 +0.5 3,634,453 - Dsui_3389 0.88 -0.5 3,634,465 + +0.5 3,634,465 + +0.5 3,634,465 + -0.5 3,634,465 + +0.5 3,634,465 + +0.5 3,634,465 + +0.5 3,634,473 - -0.5 3,634,473 - +0.5 3,634,473 - -1.8 3,634,473 - -1.8 3,634,473 - +0.5 3,634,473 - +0.5 3,634,473 - -1.1 3,634,473 - -0.5 3,634,473 - +0.5 3,634,529 + -1.5 3,634,529 + -0.5 3,634,542 + -1.1 3,634,644 - Dsui_3390 0.15 -1.2 3,634,670 + Dsui_3390 0.20 +0.5 3,634,688 - Dsui_3390 0.23 -0.5 3,634,696 + Dsui_3390 0.25 -0.5 3,634,697 - Dsui_3390 0.25 -1.1 3,634,742 - Dsui_3390 0.33 -0.1 3,634,749 + +0.5 3,634,757 - Dsui_3390 0.36 +0.8 3,634,761 + Dsui_3390 0.37 -0.5 3,634,761 + Dsui_3390 0.37 +0.5 3,634,761 + +0.5 3,634,769 - Dsui_3390 0.38 -0.8 3,634,795 - Dsui_3390 0.43 -1.5 3,634,805 - Dsui_3390 0.45 -1.7 3,634,828 + Dsui_3390 0.49 -1.1 3,634,828 + Dsui_3390 0.49 -1.1 3,634,836 - Dsui_3390 0.51 -0.1 3,634,876 - Dsui_3390 0.58 -1.9 3,634,886 - Dsui_3390 0.60 -1.0 3,634,923 + +0.5 3,634,926 - Dsui_3390 0.67 +0.0 3,634,931 - Dsui_3390 0.68 -1.8 3,634,941 - Dsui_3390 0.70 -1.8 3,635,000 + -0.5 3,635,040 + Dsui_3390 0.89 +0.5 3,635,041 - Dsui_3390 0.89 -0.4 3,635,048 - -0.3 3,635,048 - -0.1 3,635,081 - +0.3 3,635,110 - -0.5 3,635,110 - -0.5 3,635,110 - -0.7 3,635,148 - -1.9 3,635,178 + -0.5 3,635,186 - -0.3 3,635,193 + +0.5 3,635,205 - Dsui_3391 0.10 -0.2 3,635,265 + Dsui_3391 0.18 +0.5 3,635,273 - Dsui_3391 0.19 +0.2 3,635,378 - Dsui_3391 0.32 -0.5 3,635,412 + Dsui_3391 0.37 -1.1 3,635,420 - Dsui_3391 0.38 -0.8 3,635,434 - Dsui_3391 0.39 -0.4 3,635,503 - Dsui_3391 0.48 -0.3 3,635,619 + -0.5 3,635,708 - Dsui_3391 0.75 -0.6 3,635,728 + +0.5 3,635,728 + +0.5 3,635,733 + Dsui_3391 0.78 -0.5 3,635,741 - Dsui_3391 0.79 -0.5 3,635,748 + Dsui_3391 0.80 -1.1 3,635,770 - Dsui_3391 0.83 -0.2 3,635,806 + +0.5 3,635,814 - Dsui_3391 0.88 -0.2 3,635,867 - -0.5 3,635,905 + -0.5 3,635,914 - -0.7 3,635,967 - -1.0 3,636,004 - -0.3
Or see this region's nucleotide sequence