Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3357 and Dsui_3358 are separated by 16 nucleotides Dsui_3358 and Dsui_3359 are separated by 17 nucleotides Dsui_3359 and Dsui_3360 overlap by 4 nucleotides Dsui_3360 and Dsui_3361 are separated by 253 nucleotides
Dsui_3357: Dsui_3357 - hypothetical protein, at 3,598,767 to 3,599,228
_3357
Dsui_3358: Dsui_3358 - putative phosphohydrolase, at 3,599,245 to 3,600,021
_3358
Dsui_3359: Dsui_3359 - hypothetical protein, at 3,600,039 to 3,600,548
_3359
Dsui_3360: Dsui_3360 - hypothetical protein, at 3,600,545 to 3,601,003
_3360
Dsui_3361: Dsui_3361 - hypothetical protein, at 3,601,257 to 3,601,541
_3361
Position (kb)
3600
3601 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3599.060 kb on - strand, within Dsui_3357 at 3599.099 kb on - strand, within Dsui_3357 at 3599.103 kb on - strand, within Dsui_3357 at 3599.121 kb on - strand, within Dsui_3357 at 3599.143 kb on + strand, within Dsui_3357 at 3599.164 kb on + strand, within Dsui_3357 at 3599.172 kb on - strand, within Dsui_3357 at 3599.214 kb on + strand at 3599.222 kb on - strand at 3599.261 kb on + strand at 3599.272 kb on + strand at 3599.357 kb on - strand, within Dsui_3358 at 3599.363 kb on - strand, within Dsui_3358 at 3599.405 kb on - strand, within Dsui_3358 at 3599.484 kb on + strand, within Dsui_3358 at 3599.573 kb on + strand, within Dsui_3358 at 3599.573 kb on + strand, within Dsui_3358 at 3599.594 kb on + strand, within Dsui_3358 at 3599.605 kb on + strand, within Dsui_3358 at 3599.649 kb on + strand, within Dsui_3358 at 3599.683 kb on - strand, within Dsui_3358 at 3599.711 kb on - strand, within Dsui_3358 at 3599.747 kb on - strand, within Dsui_3358 at 3599.801 kb on - strand at 3599.806 kb on - strand, within Dsui_3358 at 3599.848 kb on + strand at 3599.884 kb on + strand, within Dsui_3358 at 3599.896 kb on + strand, within Dsui_3358 at 3599.897 kb on + strand, within Dsui_3358 at 3599.909 kb on - strand, within Dsui_3358 at 3599.999 kb on - strand at 3600.023 kb on - strand at 3600.097 kb on + strand, within Dsui_3359 at 3600.146 kb on + strand, within Dsui_3359 at 3600.203 kb on - strand, within Dsui_3359 at 3600.214 kb on - strand, within Dsui_3359 at 3600.306 kb on + strand, within Dsui_3359 at 3600.318 kb on + strand, within Dsui_3359 at 3600.326 kb on - strand at 3600.336 kb on - strand at 3600.371 kb on + strand, within Dsui_3359 at 3600.371 kb on + strand, within Dsui_3359 at 3600.379 kb on - strand, within Dsui_3359 at 3600.415 kb on + strand, within Dsui_3359 at 3600.441 kb on - strand, within Dsui_3359 at 3600.468 kb on + strand, within Dsui_3359 at 3600.475 kb on + strand, within Dsui_3359 at 3600.492 kb on - strand at 3600.498 kb on + strand at 3600.508 kb on + strand at 3600.508 kb on + strand at 3600.516 kb on - strand at 3600.521 kb on + strand at 3600.559 kb on - strand at 3600.574 kb on - strand at 3600.593 kb on - strand at 3600.603 kb on + strand, within Dsui_3360 at 3600.660 kb on - strand, within Dsui_3360 at 3600.665 kb on - strand at 3600.681 kb on + strand, within Dsui_3360 at 3600.681 kb on + strand, within Dsui_3360 at 3600.688 kb on + strand, within Dsui_3360 at 3600.689 kb on - strand, within Dsui_3360 at 3600.733 kb on + strand, within Dsui_3360 at 3600.768 kb on - strand, within Dsui_3360 at 3600.784 kb on + strand, within Dsui_3360 at 3600.784 kb on + strand, within Dsui_3360 at 3600.797 kb on + strand, within Dsui_3360 at 3600.805 kb on - strand, within Dsui_3360 at 3600.858 kb on + strand, within Dsui_3360 at 3600.868 kb on + strand, within Dsui_3360 at 3600.869 kb on - strand, within Dsui_3360 at 3600.880 kb on + strand, within Dsui_3360 at 3600.930 kb on + strand, within Dsui_3360 at 3600.988 kb on - strand at 3600.988 kb on - strand at 3600.990 kb on + strand at 3600.990 kb on + strand at 3600.998 kb on - strand at 3601.035 kb on - strand at 3601.044 kb on - strand at 3601.058 kb on + strand at 3601.064 kb on - strand at 3601.064 kb on - strand at 3601.074 kb on - strand at 3601.090 kb on - strand at 3601.116 kb on + strand at 3601.121 kb on + strand at 3601.129 kb on - strand at 3601.129 kb on - strand at 3601.136 kb on - strand at 3601.148 kb on + strand at 3601.158 kb on + strand at 3601.191 kb on - strand at 3601.229 kb on + strand at 3601.372 kb on + strand, within Dsui_3361 at 3601.372 kb on + strand, within Dsui_3361 at 3601.380 kb on - strand at 3601.380 kb on - strand, within Dsui_3361 at 3601.433 kb on + strand, within Dsui_3361 at 3601.477 kb on - strand, within Dsui_3361 at 3601.505 kb on - strand, within Dsui_3361 at 3601.532 kb on - strand at 3601.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 3,599,060 - Dsui_3357 0.63 -0.5 3,599,099 - Dsui_3357 0.72 +0.5 3,599,103 - Dsui_3357 0.73 -0.5 3,599,121 - Dsui_3357 0.77 -1.1 3,599,143 + Dsui_3357 0.81 -2.1 3,599,164 + Dsui_3357 0.86 +0.5 3,599,172 - Dsui_3357 0.88 -0.5 3,599,214 + -0.5 3,599,222 - +0.5 3,599,261 + +0.5 3,599,272 + -0.5 3,599,357 - Dsui_3358 0.14 -0.5 3,599,363 - Dsui_3358 0.15 +0.5 3,599,405 - Dsui_3358 0.21 -1.1 3,599,484 + Dsui_3358 0.31 +0.5 3,599,573 + Dsui_3358 0.42 +0.5 3,599,573 + Dsui_3358 0.42 +0.5 3,599,594 + Dsui_3358 0.45 +0.5 3,599,605 + Dsui_3358 0.46 -0.5 3,599,649 + Dsui_3358 0.52 +0.5 3,599,683 - Dsui_3358 0.56 +0.5 3,599,711 - Dsui_3358 0.60 +0.5 3,599,747 - Dsui_3358 0.65 +0.5 3,599,801 - +0.5 3,599,806 - Dsui_3358 0.72 -1.1 3,599,848 + +0.5 3,599,884 + Dsui_3358 0.82 -2.1 3,599,896 + Dsui_3358 0.84 +0.5 3,599,897 + Dsui_3358 0.84 -0.5 3,599,909 - Dsui_3358 0.85 -0.5 3,599,999 - -0.5 3,600,023 - +0.5 3,600,097 + Dsui_3359 0.11 -0.5 3,600,146 + Dsui_3359 0.21 -2.5 3,600,203 - Dsui_3359 0.32 +0.5 3,600,214 - Dsui_3359 0.34 -0.5 3,600,306 + Dsui_3359 0.52 +0.5 3,600,318 + Dsui_3359 0.55 -1.8 3,600,326 - +0.5 3,600,336 - +0.5 3,600,371 + Dsui_3359 0.65 -0.5 3,600,371 + Dsui_3359 0.65 +0.5 3,600,379 - Dsui_3359 0.67 +0.5 3,600,415 + Dsui_3359 0.74 -1.1 3,600,441 - Dsui_3359 0.79 -0.5 3,600,468 + Dsui_3359 0.84 -2.8 3,600,475 + Dsui_3359 0.85 +0.5 3,600,492 - +0.5 3,600,498 + -1.1 3,600,508 + -1.1 3,600,508 + -0.5 3,600,516 - +0.5 3,600,521 + +0.5 3,600,559 - +0.5 3,600,574 - -2.3 3,600,593 - -0.5 3,600,603 + Dsui_3360 0.13 +0.5 3,600,660 - Dsui_3360 0.25 -0.5 3,600,665 - +0.5 3,600,681 + Dsui_3360 0.30 -0.5 3,600,681 + Dsui_3360 0.30 -1.5 3,600,688 + Dsui_3360 0.31 -1.1 3,600,689 - Dsui_3360 0.31 -1.1 3,600,733 + Dsui_3360 0.41 -1.1 3,600,768 - Dsui_3360 0.49 -1.5 3,600,784 + Dsui_3360 0.52 -0.5 3,600,784 + Dsui_3360 0.52 +0.5 3,600,797 + Dsui_3360 0.55 -1.1 3,600,805 - Dsui_3360 0.57 -0.5 3,600,858 + Dsui_3360 0.68 -0.5 3,600,868 + Dsui_3360 0.70 +0.5 3,600,869 - Dsui_3360 0.71 +0.5 3,600,880 + Dsui_3360 0.73 -0.5 3,600,930 + Dsui_3360 0.84 -0.2 3,600,988 - +0.5 3,600,988 - +0.5 3,600,990 + -1.1 3,600,990 + -1.5 3,600,998 - +0.5 3,601,035 - -0.5 3,601,044 - -2.3 3,601,058 + +0.5 3,601,064 - -1.8 3,601,064 - +0.5 3,601,074 - +0.5 3,601,090 - -0.5 3,601,116 + -1.1 3,601,121 + +0.5 3,601,129 - -0.5 3,601,129 - -0.5 3,601,136 - -0.5 3,601,148 + +0.5 3,601,158 + -0.5 3,601,191 - +0.5 3,601,229 + +0.5 3,601,372 + Dsui_3361 0.40 +0.5 3,601,372 + Dsui_3361 0.40 +0.5 3,601,380 - +0.5 3,601,380 - Dsui_3361 0.43 -1.8 3,601,433 + Dsui_3361 0.62 -1.1 3,601,477 - Dsui_3361 0.77 +0.5 3,601,505 - Dsui_3361 0.87 +0.5 3,601,532 - -1.8 3,601,537 + -0.1
Or see this region's nucleotide sequence