Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3230 and Dsui_3231 are separated by 66 nucleotides Dsui_3231 and Dsui_3232 are separated by 253 nucleotides Dsui_3232 and Dsui_3233 are separated by 14 nucleotides
Dsui_3230: Dsui_3230 - hypothetical protein, at 3,468,593 to 3,471,172
_3230
Dsui_3231: Dsui_3231 - hypothetical protein, at 3,471,239 to 3,474,592
_3231
Dsui_3232: Dsui_3232 - activator of osmoprotectant transporter ProP, at 3,474,846 to 3,475,268
_3232
Dsui_3233: Dsui_3233 - hypothetical protein, at 3,475,283 to 3,475,750
_3233
Position (kb)
3471
3472
3473
3474
3475 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3470.292 kb on - strand, within Dsui_3230 at 3470.331 kb on - strand, within Dsui_3230 at 3470.413 kb on + strand at 3470.472 kb on - strand, within Dsui_3230 at 3470.477 kb on - strand, within Dsui_3230 at 3470.583 kb on - strand, within Dsui_3230 at 3470.710 kb on - strand, within Dsui_3230 at 3470.760 kb on - strand, within Dsui_3230 at 3470.924 kb on - strand at 3470.973 kb on + strand at 3470.981 kb on - strand at 3471.041 kb on - strand at 3471.154 kb on + strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.245 kb on - strand at 3471.333 kb on - strand at 3471.353 kb on - strand at 3471.433 kb on - strand at 3471.485 kb on + strand at 3471.493 kb on - strand at 3471.602 kb on - strand at 3471.718 kb on - strand at 3471.734 kb on + strand at 3471.901 kb on + strand at 3471.901 kb on + strand, within Dsui_3231 at 3472.496 kb on - strand at 3472.518 kb on - strand at 3472.664 kb on - strand at 3472.675 kb on + strand at 3472.683 kb on - strand, within Dsui_3231 at 3472.683 kb on - strand at 3472.683 kb on - strand, within Dsui_3231 at 3472.687 kb on + strand at 3472.687 kb on + strand at 3472.695 kb on - strand, within Dsui_3231 at 3472.951 kb on + strand at 3473.136 kb on + strand at 3473.147 kb on + strand at 3473.479 kb on - strand, within Dsui_3231 at 3473.552 kb on - strand, within Dsui_3231 at 3473.558 kb on - strand, within Dsui_3231 at 3473.688 kb on + strand at 3473.688 kb on + strand at 3473.739 kb on - strand, within Dsui_3231 at 3473.747 kb on - strand, within Dsui_3231 at 3473.764 kb on + strand at 3473.772 kb on - strand at 3473.800 kb on + strand at 3473.800 kb on + strand, within Dsui_3231 at 3473.888 kb on + strand, within Dsui_3231 at 3473.893 kb on - strand, within Dsui_3231 at 3474.080 kb on + strand at 3474.090 kb on - strand at 3474.147 kb on - strand at 3474.435 kb on - strand at 3474.491 kb on + strand at 3474.499 kb on - strand at 3474.584 kb on + strand at 3474.599 kb on + strand at 3474.607 kb on - strand at 3474.719 kb on - strand at 3474.811 kb on + strand at 3474.850 kb on + strand at 3474.973 kb on - strand at 3475.117 kb on + strand, within Dsui_3232 at 3475.139 kb on + strand, within Dsui_3232 at 3475.195 kb on - strand, within Dsui_3232 at 3475.278 kb on - strand at 3475.573 kb on + strand, within Dsui_3233 at 3475.581 kb on - strand, within Dsui_3233
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 3,470,292 - Dsui_3230 0.66 -1.0 3,470,331 - Dsui_3230 0.67 -0.6 3,470,413 + +0.5 3,470,472 - Dsui_3230 0.73 -0.9 3,470,477 - Dsui_3230 0.73 -3.0 3,470,583 - Dsui_3230 0.77 -1.9 3,470,710 - Dsui_3230 0.82 -0.5 3,470,760 - Dsui_3230 0.84 -1.5 3,470,924 - -0.5 3,470,973 + +0.5 3,470,981 - -1.1 3,471,041 - -1.9 3,471,154 + +0.5 3,471,245 - -0.1 3,471,245 - -0.8 3,471,245 - -0.5 3,471,333 - -2.1 3,471,353 - +0.5 3,471,433 - -2.1 3,471,485 + -0.5 3,471,493 - -0.5 3,471,602 - -0.5 3,471,718 - +0.5 3,471,734 + -0.5 3,471,901 + +0.5 3,471,901 + Dsui_3231 0.20 -2.7 3,472,496 - +0.5 3,472,518 - +0.5 3,472,664 - +0.5 3,472,675 + +0.5 3,472,683 - Dsui_3231 0.43 -2.1 3,472,683 - -0.5 3,472,683 - Dsui_3231 0.43 -1.9 3,472,687 + +0.5 3,472,687 + +0.5 3,472,695 - Dsui_3231 0.43 -2.4 3,472,951 + -0.5 3,473,136 + -0.5 3,473,147 + +0.5 3,473,479 - Dsui_3231 0.67 -0.5 3,473,552 - Dsui_3231 0.69 -0.5 3,473,558 - Dsui_3231 0.69 -0.5 3,473,688 + -0.5 3,473,688 + -0.5 3,473,739 - Dsui_3231 0.75 +0.5 3,473,747 - Dsui_3231 0.75 -1.9 3,473,764 + -1.1 3,473,772 - +0.5 3,473,800 + +0.5 3,473,800 + Dsui_3231 0.76 -1.1 3,473,888 + Dsui_3231 0.79 -1.1 3,473,893 - Dsui_3231 0.79 -0.5 3,474,080 + +0.5 3,474,090 - +0.5 3,474,147 - -1.1 3,474,435 - +0.5 3,474,491 + +0.5 3,474,499 - +0.5 3,474,584 + -1.9 3,474,599 + +0.5 3,474,607 - -1.9 3,474,719 - -0.5 3,474,811 + +0.2 3,474,850 + -0.4 3,474,973 - +0.5 3,475,117 + Dsui_3232 0.64 -0.0 3,475,139 + Dsui_3232 0.69 -0.3 3,475,195 - Dsui_3232 0.83 -0.5 3,475,278 - -1.1 3,475,573 + Dsui_3233 0.62 +0.0 3,475,581 - Dsui_3233 0.64 -1.1
Or see this region's nucleotide sequence