Strain Fitness in Dechlorosoma suillum PS around Dsui_3227

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3226 and Dsui_3227 are separated by 76 nucleotidesDsui_3227 and Dsui_3228 are separated by 163 nucleotidesDsui_3228 and Dsui_3229 are separated by 72 nucleotides Dsui_3226: Dsui_3226 - putative SAM-dependent methyltransferase, at 3,464,227 to 3,465,186 _3226 Dsui_3227: Dsui_3227 - 2-isopropylmalate synthase, at 3,465,263 to 3,466,945 _3227 Dsui_3228: Dsui_3228 - transcriptional regulator, at 3,467,109 to 3,467,576 _3228 Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590 _3229 Position (kb) 3465 3466 3467Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3464.263 kb on + strandat 3464.324 kb on + strand, within Dsui_3226at 3464.372 kb on + strand, within Dsui_3226at 3464.395 kb on - strand, within Dsui_3226at 3464.486 kb on - strand, within Dsui_3226at 3464.667 kb on - strand, within Dsui_3226at 3464.681 kb on - strandat 3464.791 kb on + strand, within Dsui_3226at 3464.965 kb on + strand, within Dsui_3226at 3464.990 kb on + strand, within Dsui_3226at 3464.998 kb on + strand, within Dsui_3226at 3465.052 kb on + strand, within Dsui_3226at 3465.052 kb on + strandat 3465.060 kb on - strand, within Dsui_3226at 3465.071 kb on - strandat 3465.104 kb on + strandat 3465.279 kb on + strandat 3465.330 kb on - strandat 3465.415 kb on - strandat 3465.578 kb on + strand, within Dsui_3227at 3465.586 kb on - strand, within Dsui_3227at 3465.608 kb on - strand, within Dsui_3227at 3465.612 kb on - strand, within Dsui_3227at 3465.637 kb on + strand, within Dsui_3227at 3465.659 kb on - strand, within Dsui_3227at 3465.697 kb on + strandat 3465.982 kb on - strand, within Dsui_3227at 3466.071 kb on - strand, within Dsui_3227at 3466.199 kb on - strand, within Dsui_3227at 3466.286 kb on - strand, within Dsui_3227at 3466.327 kb on - strand, within Dsui_3227at 3466.386 kb on - strand, within Dsui_3227at 3466.405 kb on + strand, within Dsui_3227at 3466.477 kb on + strandat 3466.546 kb on + strandat 3466.552 kb on - strand, within Dsui_3227at 3466.553 kb on - strand, within Dsui_3227at 3466.611 kb on - strand, within Dsui_3227at 3466.681 kb on + strandat 3466.717 kb on - strand, within Dsui_3227at 3466.722 kb on - strand, within Dsui_3227at 3466.837 kb on - strandat 3466.871 kb on - strandat 3466.886 kb on - strandat 3466.941 kb on - strandat 3467.154 kb on - strandat 3467.287 kb on + strand, within Dsui_3228at 3467.338 kb on + strand, within Dsui_3228at 3467.356 kb on + strand, within Dsui_3228at 3467.420 kb on - strand, within Dsui_3228at 3467.539 kb on + strandat 3467.556 kb on + strandat 3467.563 kb on - strandat 3467.617 kb on - strandat 3467.660 kb on - strandat 3467.667 kb on + strandat 3467.714 kb on + strandat 3467.722 kb on - strandat 3467.722 kb on - strandat 3467.722 kb on - strandat 3467.763 kb on - strand, within Dsui_3229at 3467.805 kb on + strandat 3467.812 kb on - strand, within Dsui_3229at 3467.820 kb on + strandat 3467.828 kb on - strand, within Dsui_3229

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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3,464,263 + -0.5
3,464,324 + Dsui_3226 0.10 +0.5
3,464,372 + Dsui_3226 0.15 +0.5
3,464,395 - Dsui_3226 0.17 -1.1
3,464,486 - Dsui_3226 0.27 -1.9
3,464,667 - Dsui_3226 0.46 -2.7
3,464,681 - +0.5
3,464,791 + Dsui_3226 0.59 -2.1
3,464,965 + Dsui_3226 0.77 -1.1
3,464,990 + Dsui_3226 0.79 -0.5
3,464,998 + Dsui_3226 0.80 +0.0
3,465,052 + Dsui_3226 0.86 -2.5
3,465,052 + +0.5
3,465,060 - Dsui_3226 0.87 -1.1
3,465,071 - +0.5
3,465,104 + -2.5
3,465,279 + -1.1
3,465,330 - -1.0
3,465,415 - -1.1
3,465,578 + Dsui_3227 0.19 -0.5
3,465,586 - Dsui_3227 0.19 +0.1
3,465,608 - Dsui_3227 0.20 -0.1
3,465,612 - Dsui_3227 0.21 -1.4
3,465,637 + Dsui_3227 0.22 -1.1
3,465,659 - Dsui_3227 0.24 -1.2
3,465,697 + +0.5
3,465,982 - Dsui_3227 0.43 -0.5
3,466,071 - Dsui_3227 0.48 -0.7
3,466,199 - Dsui_3227 0.56 +0.5
3,466,286 - Dsui_3227 0.61 -0.2
3,466,327 - Dsui_3227 0.63 -0.2
3,466,386 - Dsui_3227 0.67 -0.5
3,466,405 + Dsui_3227 0.68 -2.1
3,466,477 + +1.5
3,466,546 + +0.5
3,466,552 - Dsui_3227 0.77 -0.5
3,466,553 - Dsui_3227 0.77 -1.0
3,466,611 - Dsui_3227 0.80 -2.0
3,466,681 + +0.5
3,466,717 - Dsui_3227 0.86 -1.1
3,466,722 - Dsui_3227 0.87 -1.5
3,466,837 - +0.5
3,466,871 - +0.1
3,466,886 - +2.0
3,466,941 - -1.0
3,467,154 - -1.5
3,467,287 + Dsui_3228 0.38 -0.3
3,467,338 + Dsui_3228 0.49 -0.3
3,467,356 + Dsui_3228 0.53 -0.3
3,467,420 - Dsui_3228 0.66 -0.5
3,467,539 + -0.3
3,467,556 + +0.0
3,467,563 - -1.1
3,467,617 - +0.5
3,467,660 - -1.8
3,467,667 + -0.5
3,467,714 + +0.5
3,467,722 - +0.5
3,467,722 - +0.5
3,467,722 - -3.2
3,467,763 - Dsui_3229 0.12 -2.1
3,467,805 + +0.5
3,467,812 - Dsui_3229 0.17 -2.3
3,467,820 + -2.1
3,467,828 - Dsui_3229 0.19 -0.7

Or see this region's nucleotide sequence