Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3004 and Dsui_3005 are separated by 11 nucleotides Dsui_3005 and Dsui_3006 are separated by 136 nucleotides Dsui_3006 and Dsui_3007 are separated by 4 nucleotides
Dsui_3004: Dsui_3004 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,217,040 to 3,219,646
_3004
Dsui_3005: Dsui_3005 - transcription elongation factor GreB, at 3,219,658 to 3,220,215
_3005
Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969
_3006
Dsui_3007: Dsui_3007 - hydrogenase assembly chaperone HypC/HupF, at 3,220,974 to 3,221,261
_3007
Position (kb)
3219
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1 at 3218.672 kb on - strand, within Dsui_3004 at 3218.900 kb on + strand, within Dsui_3004 at 3218.963 kb on - strand, within Dsui_3004 at 3219.002 kb on + strand, within Dsui_3004 at 3219.007 kb on + strand at 3219.007 kb on + strand, within Dsui_3004 at 3219.015 kb on - strand, within Dsui_3004 at 3219.027 kb on + strand, within Dsui_3004 at 3219.027 kb on + strand at 3219.219 kb on - strand, within Dsui_3004 at 3219.224 kb on + strand, within Dsui_3004 at 3219.334 kb on + strand at 3219.413 kb on - strand at 3219.434 kb on - strand at 3219.581 kb on + strand at 3219.589 kb on - strand at 3219.589 kb on - strand at 3219.771 kb on - strand, within Dsui_3005 at 3219.771 kb on - strand, within Dsui_3005 at 3219.989 kb on - strand, within Dsui_3005 at 3220.047 kb on - strand, within Dsui_3005 at 3220.047 kb on - strand, within Dsui_3005 at 3220.127 kb on - strand, within Dsui_3005 at 3220.132 kb on - strand, within Dsui_3005 at 3220.186 kb on + strand at 3220.205 kb on + strand at 3220.417 kb on - strand, within Dsui_3006 at 3220.615 kb on - strand, within Dsui_3006 at 3221.107 kb on - strand, within Dsui_3007 at 3221.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 3,218,672 - Dsui_3004 0.63 -0.4 3,218,900 + Dsui_3004 0.71 -1.8 3,218,963 - Dsui_3004 0.74 -0.0 3,219,002 + Dsui_3004 0.75 -1.5 3,219,007 + +0.5 3,219,007 + Dsui_3004 0.75 -2.3 3,219,015 - Dsui_3004 0.76 -0.1 3,219,027 + Dsui_3004 0.76 +0.5 3,219,027 + +0.5 3,219,219 - Dsui_3004 0.84 -0.0 3,219,224 + Dsui_3004 0.84 -1.5 3,219,334 + +0.5 3,219,413 - -0.0 3,219,434 - -0.0 3,219,581 + -1.1 3,219,589 - -0.0 3,219,589 - -0.0 3,219,771 - Dsui_3005 0.20 +0.4 3,219,771 - Dsui_3005 0.20 +0.2 3,219,989 - Dsui_3005 0.59 +0.2 3,220,047 - Dsui_3005 0.70 +0.0 3,220,047 - Dsui_3005 0.70 -0.2 3,220,127 - Dsui_3005 0.84 +0.2 3,220,132 - Dsui_3005 0.85 -0.3 3,220,186 + +0.5 3,220,205 + -1.5 3,220,417 - Dsui_3006 0.11 -2.1 3,220,615 - Dsui_3006 0.43 -1.5 3,221,107 - Dsui_3007 0.46 -2.5 3,221,137 + +0.5
Or see this region's nucleotide sequence