Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2821 and Dsui_2822 overlap by 4 nucleotides Dsui_2822 and Dsui_2823 are separated by 73 nucleotides Dsui_2823 and Dsui_2824 are separated by 100 nucleotides Dsui_2824 and Dsui_2825 are separated by 143 nucleotides
Dsui_2821: Dsui_2821 - K+ transport system, NAD-binding component, at 2,997,348 to 2,998,385
_2821
Dsui_2822: Dsui_2822 - hypothetical protein, at 2,998,382 to 2,998,951
_2822
Dsui_2823: Dsui_2823 - DNA internalization-related competence protein ComEC/Rec2, at 2,999,025 to 3,000,758
_2823
Dsui_2824: Dsui_2824 - hypothetical protein, at 3,000,859 to 3,000,951
_2824
Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202
_2825
Position (kb)
2999
3000
3001 Strain fitness (log2 ratio)
-2
-1
0
1 at 2998.212 kb on - strand, within Dsui_2821 at 2998.323 kb on + strand at 2998.333 kb on + strand at 2998.490 kb on - strand, within Dsui_2822 at 2998.534 kb on - strand, within Dsui_2822 at 2998.647 kb on - strand, within Dsui_2822 at 2998.697 kb on + strand at 2998.939 kb on - strand at 2998.983 kb on + strand at 2998.983 kb on + strand at 2998.991 kb on - strand at 2999.037 kb on + strand at 2999.256 kb on - strand at 2999.747 kb on - strand, within Dsui_2823 at 2999.830 kb on - strand at 3000.198 kb on - strand, within Dsui_2823 at 3000.247 kb on + strand at 3000.266 kb on + strand at 3000.300 kb on - strand, within Dsui_2823 at 3000.399 kb on - strand, within Dsui_2823 at 3000.470 kb on + strand, within Dsui_2823 at 3000.478 kb on - strand at 3000.488 kb on - strand, within Dsui_2823 at 3000.573 kb on - strand, within Dsui_2823 at 3000.575 kb on - strand, within Dsui_2823 at 3000.618 kb on + strand at 3000.618 kb on + strand at 3000.626 kb on - strand at 3000.732 kb on - strand at 3000.781 kb on + strand at 3000.781 kb on - strand at 3000.788 kb on - strand at 3000.789 kb on - strand at 3000.805 kb on + strand at 3000.812 kb on + strand at 3000.813 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.822 kb on + strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.830 kb on - strand at 3000.830 kb on - strand at 3000.846 kb on + strand at 3000.931 kb on - strand, within Dsui_2824 at 3000.931 kb on - strand, within Dsui_2824 at 3000.948 kb on - strand at 3001.012 kb on + strand at 3001.049 kb on + strand at 3001.049 kb on + strand at 3001.057 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.096 kb on - strand at 3001.124 kb on - strand at 3001.125 kb on + strand at 3001.133 kb on - strand at 3001.135 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.303 kb on + strand at 3001.303 kb on + strand at 3001.305 kb on + strand at 3001.305 kb on + strand at 3001.308 kb on - strand at 3001.308 kb on - strand at 3001.311 kb on - strand at 3001.367 kb on + strand at 3001.375 kb on - strand at 3001.375 kb on - strand at 3001.401 kb on + strand at 3001.401 kb on + strand at 3001.409 kb on - strand, within Dsui_2825 at 3001.409 kb on - strand, within Dsui_2825 at 3001.522 kb on - strand, within Dsui_2825 at 3001.529 kb on - strand, within Dsui_2825 at 3001.590 kb on + strand, within Dsui_2825 at 3001.639 kb on + strand at 3001.654 kb on + strand, within Dsui_2825 at 3001.662 kb on - strand at 3001.688 kb on + strand, within Dsui_2825 at 3001.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 2,998,212 - Dsui_2821 0.83 -0.4 2,998,323 + +0.6 2,998,333 + -0.4 2,998,490 - Dsui_2822 0.19 -0.4 2,998,534 - Dsui_2822 0.27 -2.0 2,998,647 - Dsui_2822 0.46 +0.6 2,998,697 + +0.6 2,998,939 - -0.4 2,998,983 + +0.6 2,998,983 + +0.6 2,998,991 - -2.7 2,999,037 + -2.0 2,999,256 - +0.6 2,999,747 - Dsui_2823 0.42 -0.4 2,999,830 - +0.6 3,000,198 - Dsui_2823 0.68 +0.6 3,000,247 + +0.6 3,000,266 + +0.6 3,000,300 - Dsui_2823 0.74 -0.4 3,000,399 - Dsui_2823 0.79 -1.0 3,000,470 + Dsui_2823 0.83 -2.0 3,000,478 - -0.4 3,000,488 - Dsui_2823 0.84 -1.4 3,000,573 - Dsui_2823 0.89 -0.4 3,000,575 - Dsui_2823 0.89 +0.6 3,000,618 + +0.6 3,000,618 + +0.6 3,000,626 - +0.6 3,000,732 - -1.0 3,000,781 + +0.6 3,000,781 - +0.6 3,000,788 - +0.6 3,000,789 - -1.4 3,000,805 + -0.4 3,000,812 + -0.4 3,000,813 - -0.4 3,000,820 - -0.4 3,000,820 - -0.4 3,000,820 - -1.0 3,000,822 + +0.6 3,000,823 - -1.0 3,000,823 - +0.6 3,000,823 - -1.7 3,000,823 - -1.7 3,000,830 - +0.6 3,000,830 - -0.4 3,000,846 + +0.6 3,000,931 - Dsui_2824 0.77 +0.6 3,000,931 - Dsui_2824 0.77 -0.4 3,000,948 - +0.6 3,001,012 + +0.6 3,001,049 + -1.7 3,001,049 + -1.0 3,001,057 - -2.0 3,001,066 - -0.4 3,001,066 - -0.4 3,001,066 - +0.6 3,001,096 - -2.0 3,001,124 - +0.6 3,001,125 + -1.4 3,001,133 - +0.6 3,001,135 - -2.4 3,001,186 - -0.4 3,001,186 - +0.6 3,001,186 - +0.6 3,001,303 + -0.4 3,001,303 + +0.6 3,001,305 + -1.4 3,001,305 + +0.6 3,001,308 - +0.6 3,001,308 - +0.6 3,001,311 - -1.0 3,001,367 + -0.4 3,001,375 - +0.6 3,001,375 - -0.4 3,001,401 + -1.4 3,001,401 + +0.6 3,001,409 - Dsui_2825 0.10 +0.6 3,001,409 - Dsui_2825 0.10 -2.2 3,001,522 - Dsui_2825 0.14 +0.6 3,001,529 - Dsui_2825 0.14 +0.6 3,001,590 + Dsui_2825 0.16 +0.6 3,001,639 + +0.6 3,001,654 + Dsui_2825 0.18 -0.5 3,001,662 - +0.6 3,001,688 + Dsui_2825 0.19 +0.6 3,001,733 + +0.6
Or see this region's nucleotide sequence