Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2746 and Dsui_2747 are separated by 102 nucleotides Dsui_2747 and Dsui_2748 are separated by 92 nucleotides Dsui_2748 and Dsui_2749 are separated by 122 nucleotides
Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900
_2746
Dsui_2747: Dsui_2747 - uncharacterized integral membrane protein, at 2,903,003 to 2,903,860
_2747
Dsui_2748: Dsui_2748 - hypothetical protein, at 2,903,953 to 2,904,237
_2748
Dsui_2749: Dsui_2749 - putative acyltransferase, at 2,904,360 to 2,905,478
_2749
Position (kb)
2903
2904 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2902.020 kb on - strand, within Dsui_2746 at 2902.027 kb on + strand, within Dsui_2746 at 2902.068 kb on + strand, within Dsui_2746 at 2902.171 kb on + strand, within Dsui_2746 at 2902.186 kb on - strand, within Dsui_2746 at 2902.225 kb on + strand, within Dsui_2746 at 2902.317 kb on + strand, within Dsui_2746 at 2902.352 kb on + strand, within Dsui_2746 at 2902.401 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.406 kb on + strand, within Dsui_2746 at 2902.432 kb on + strand, within Dsui_2746 at 2902.464 kb on + strand, within Dsui_2746 at 2902.473 kb on + strand, within Dsui_2746 at 2902.595 kb on - strand, within Dsui_2746 at 2902.752 kb on + strand at 2902.755 kb on + strand at 2902.770 kb on - strand at 2902.816 kb on + strand at 2902.819 kb on + strand at 2902.864 kb on + strand at 2902.864 kb on + strand at 2902.864 kb on + strand at 2902.872 kb on - strand at 2902.872 kb on - strand at 2902.888 kb on + strand at 2902.922 kb on - strand at 2902.958 kb on + strand at 2903.016 kb on - strand at 2903.018 kb on + strand at 2903.174 kb on - strand, within Dsui_2747 at 2903.189 kb on - strand, within Dsui_2747 at 2903.313 kb on - strand, within Dsui_2747 at 2903.316 kb on + strand, within Dsui_2747 at 2903.348 kb on + strand, within Dsui_2747 at 2903.361 kb on + strand, within Dsui_2747 at 2903.369 kb on - strand, within Dsui_2747 at 2903.374 kb on - strand, within Dsui_2747 at 2903.460 kb on - strand at 2903.531 kb on - strand, within Dsui_2747 at 2903.615 kb on - strand, within Dsui_2747 at 2903.658 kb on + strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.666 kb on - strand, within Dsui_2747 at 2903.714 kb on - strand, within Dsui_2747 at 2903.754 kb on + strand, within Dsui_2747 at 2903.784 kb on - strand at 2903.792 kb on + strand at 2903.820 kb on + strand at 2903.820 kb on + strand at 2903.820 kb on + strand at 2903.831 kb on + strand at 2903.846 kb on - strand at 2903.854 kb on + strand at 2903.867 kb on - strand at 2903.874 kb on - strand at 2903.932 kb on + strand at 2903.940 kb on - strand at 2903.940 kb on - strand at 2903.940 kb on - strand at 2903.940 kb on - strand at 2903.959 kb on - strand at 2903.987 kb on + strand, within Dsui_2748 at 2903.987 kb on + strand at 2903.987 kb on + strand, within Dsui_2748 at 2904.014 kb on + strand, within Dsui_2748 at 2904.124 kb on + strand, within Dsui_2748 at 2904.124 kb on + strand at 2904.151 kb on + strand, within Dsui_2748 at 2904.286 kb on + strand at 2904.291 kb on - strand at 2904.341 kb on + strand at 2904.380 kb on + strand at 2904.388 kb on + strand at 2904.471 kb on + strand at 2904.471 kb on + strand at 2904.479 kb on - strand, within Dsui_2749 at 2904.532 kb on + strand, within Dsui_2749 at 2904.636 kb on - strand, within Dsui_2749 at 2904.669 kb on + strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.677 kb on - strand, within Dsui_2749 at 2904.810 kb on - strand, within Dsui_2749
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 2,902,020 - Dsui_2746 0.47 +0.6 2,902,027 + Dsui_2746 0.48 -0.2 2,902,068 + Dsui_2746 0.50 -0.1 2,902,171 + Dsui_2746 0.56 -0.1 2,902,186 - Dsui_2746 0.57 -0.4 2,902,225 + Dsui_2746 0.59 +0.1 2,902,317 + Dsui_2746 0.65 -0.1 2,902,352 + Dsui_2746 0.67 -0.3 2,902,401 + Dsui_2746 0.70 -0.0 2,902,406 + Dsui_2746 0.70 +0.1 2,902,406 + Dsui_2746 0.70 -0.0 2,902,406 + Dsui_2746 0.70 -0.2 2,902,432 + Dsui_2746 0.72 -0.1 2,902,464 + Dsui_2746 0.74 -0.1 2,902,473 + Dsui_2746 0.74 -0.1 2,902,595 - Dsui_2746 0.82 -0.4 2,902,752 + +0.1 2,902,755 + +0.3 2,902,770 - -1.0 2,902,816 + +0.1 2,902,819 + +0.0 2,902,864 + +0.1 2,902,864 + -0.0 2,902,864 + -2.1 2,902,872 - +0.6 2,902,872 - -0.4 2,902,888 + -0.3 2,902,922 - +0.6 2,902,958 + +0.5 2,903,016 - +0.6 2,903,018 + -1.0 2,903,174 - Dsui_2747 0.20 +0.6 2,903,189 - Dsui_2747 0.22 -0.4 2,903,313 - Dsui_2747 0.36 -1.0 2,903,316 + Dsui_2747 0.36 -1.4 2,903,348 + Dsui_2747 0.40 -0.4 2,903,361 + Dsui_2747 0.42 -2.7 2,903,369 - Dsui_2747 0.43 +0.6 2,903,374 - Dsui_2747 0.43 +0.6 2,903,460 - -1.0 2,903,531 - Dsui_2747 0.62 +0.6 2,903,615 - Dsui_2747 0.71 +0.6 2,903,658 + Dsui_2747 0.76 -2.0 2,903,666 - Dsui_2747 0.77 -1.0 2,903,666 - Dsui_2747 0.77 -1.0 2,903,666 - Dsui_2747 0.77 -0.4 2,903,666 - Dsui_2747 0.77 -0.4 2,903,714 - Dsui_2747 0.83 -0.4 2,903,754 + Dsui_2747 0.88 -1.9 2,903,784 - +0.6 2,903,792 + -0.8 2,903,820 + -0.6 2,903,820 + -1.2 2,903,820 + -0.4 2,903,831 + +0.6 2,903,846 - +0.6 2,903,854 + +0.9 2,903,867 - +0.6 2,903,874 - -2.8 2,903,932 + +0.6 2,903,940 - -0.4 2,903,940 - -0.3 2,903,940 - -0.6 2,903,940 - -0.5 2,903,959 - -0.9 2,903,987 + Dsui_2748 0.12 +0.6 2,903,987 + -0.4 2,903,987 + Dsui_2748 0.12 -0.4 2,904,014 + Dsui_2748 0.21 -0.4 2,904,124 + Dsui_2748 0.60 +0.6 2,904,124 + +0.6 2,904,151 + Dsui_2748 0.69 -1.0 2,904,286 + +0.0 2,904,291 - -0.1 2,904,341 + -0.4 2,904,380 + -1.0 2,904,388 + -1.0 2,904,471 + +0.6 2,904,471 + -1.4 2,904,479 - Dsui_2749 0.11 +0.2 2,904,532 + Dsui_2749 0.15 -1.4 2,904,636 - Dsui_2749 0.25 -1.2 2,904,669 + Dsui_2749 0.28 +0.6 2,904,677 - Dsui_2749 0.28 -0.4 2,904,677 - Dsui_2749 0.28 -1.1 2,904,677 - Dsui_2749 0.28 -0.4 2,904,677 - Dsui_2749 0.28 +1.6 2,904,810 - Dsui_2749 0.40 -1.2
Or see this region's nucleotide sequence