Strain Fitness in Dechlorosoma suillum PS around Dsui_2631

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2629 and Dsui_2630 overlap by 4 nucleotidesDsui_2630 and Dsui_2631 are separated by 8 nucleotidesDsui_2631 and Dsui_2632 are separated by 44 nucleotidesDsui_2632 and Dsui_2633 are separated by 76 nucleotides Dsui_2629: Dsui_2629 - HD-GYP domain-containing protein, at 2,781,200 to 2,782,510 _2629 Dsui_2630: Dsui_2630 - flagellar basal-body rod protein FlgB, at 2,782,507 to 2,783,145 _2630 Dsui_2631: Dsui_2631 - hypothetical protein, at 2,783,154 to 2,783,396 _2631 Dsui_2632: Dsui_2632 - hypothetical protein, at 2,783,441 to 2,783,689 _2632 Dsui_2633: Dsui_2633 - hypothetical protein, at 2,783,766 to 2,784,023 _2633 Position (kb) 2783 2784Strain fitness (log2 ratio) -2 -1 0 1at 2782.167 kb on - strand, within Dsui_2629at 2782.294 kb on - strand, within Dsui_2629at 2782.302 kb on - strand, within Dsui_2629at 2782.310 kb on - strand, within Dsui_2629at 2782.323 kb on - strand, within Dsui_2629at 2782.365 kb on + strand, within Dsui_2629at 2782.378 kb on - strand, within Dsui_2629at 2782.383 kb on - strandat 2782.485 kb on - strandat 2782.495 kb on + strandat 2782.496 kb on + strandat 2782.503 kb on - strandat 2782.503 kb on - strandat 2782.503 kb on - strandat 2782.503 kb on - strandat 2782.511 kb on + strandat 2782.537 kb on - strandat 2782.656 kb on + strand, within Dsui_2630at 2782.694 kb on + strand, within Dsui_2630at 2782.702 kb on - strand, within Dsui_2630at 2782.888 kb on + strand, within Dsui_2630at 2783.061 kb on + strand, within Dsui_2630at 2783.061 kb on + strand, within Dsui_2630at 2783.066 kb on + strand, within Dsui_2630at 2783.066 kb on + strand, within Dsui_2630at 2783.066 kb on + strand, within Dsui_2630at 2783.066 kb on + strand, within Dsui_2630at 2783.074 kb on + strand, within Dsui_2630at 2783.084 kb on - strandat 2783.086 kb on + strandat 2783.106 kb on - strandat 2783.129 kb on + strandat 2783.184 kb on - strand, within Dsui_2631at 2783.184 kb on - strand, within Dsui_2631at 2783.329 kb on - strand, within Dsui_2631at 2783.380 kb on + strandat 2783.426 kb on - strandat 2783.461 kb on + strandat 2783.480 kb on - strand, within Dsui_2632at 2783.480 kb on - strand, within Dsui_2632at 2783.705 kb on + strandat 2783.705 kb on + strandat 2783.708 kb on - strandat 2783.852 kb on - strand, within Dsui_2633at 2783.872 kb on + strand, within Dsui_2633at 2783.904 kb on + strand, within Dsui_2633at 2783.967 kb on + strand, within Dsui_2633at 2783.975 kb on - strand, within Dsui_2633at 2783.975 kb on - strand, within Dsui_2633at 2783.976 kb on - strand, within Dsui_2633at 2783.987 kb on + strand, within Dsui_2633at 2784.000 kb on + strandat 2784.055 kb on - strandat 2784.071 kb on + strandat 2784.084 kb on - strandat 2784.092 kb on + strandat 2784.100 kb on - strandat 2784.100 kb on - strandat 2784.144 kb on + strandat 2784.157 kb on - strandat 2784.159 kb on + strandat 2784.159 kb on + strandat 2784.215 kb on - strandat 2784.217 kb on - strandat 2784.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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2,782,167 - Dsui_2629 0.74 -0.4
2,782,294 - Dsui_2629 0.83 -1.4
2,782,302 - Dsui_2629 0.84 -1.8
2,782,310 - Dsui_2629 0.85 -0.4
2,782,323 - Dsui_2629 0.86 -1.8
2,782,365 + Dsui_2629 0.89 +0.6
2,782,378 - Dsui_2629 0.90 +0.6
2,782,383 - -0.4
2,782,485 - -0.4
2,782,495 + +0.6
2,782,496 + +1.6
2,782,503 - -1.0
2,782,503 - +0.6
2,782,503 - +0.6
2,782,503 - +0.6
2,782,511 + +0.6
2,782,537 - +0.6
2,782,656 + Dsui_2630 0.23 -0.4
2,782,694 + Dsui_2630 0.29 -2.2
2,782,702 - Dsui_2630 0.31 +0.6
2,782,888 + Dsui_2630 0.60 -1.0
2,783,061 + Dsui_2630 0.87 +0.6
2,783,061 + Dsui_2630 0.87 -2.0
2,783,066 + Dsui_2630 0.87 +0.6
2,783,066 + Dsui_2630 0.87 -2.0
2,783,066 + Dsui_2630 0.87 +0.6
2,783,066 + Dsui_2630 0.87 +0.6
2,783,074 + Dsui_2630 0.89 -0.4
2,783,084 - +0.6
2,783,086 + -1.0
2,783,106 - +0.6
2,783,129 + +0.6
2,783,184 - Dsui_2631 0.12 -0.4
2,783,184 - Dsui_2631 0.12 -0.4
2,783,329 - Dsui_2631 0.72 -1.4
2,783,380 + +0.6
2,783,426 - +0.6
2,783,461 + -0.4
2,783,480 - Dsui_2632 0.16 -2.4
2,783,480 - Dsui_2632 0.16 +0.6
2,783,705 + +0.6
2,783,705 + -1.0
2,783,708 - -1.0
2,783,852 - Dsui_2633 0.33 -0.4
2,783,872 + Dsui_2633 0.41 +0.6
2,783,904 + Dsui_2633 0.53 -1.0
2,783,967 + Dsui_2633 0.78 -2.0
2,783,975 - Dsui_2633 0.81 +0.6
2,783,975 - Dsui_2633 0.81 +0.6
2,783,976 - Dsui_2633 0.81 -0.4
2,783,987 + Dsui_2633 0.86 +0.6
2,784,000 + +0.6
2,784,055 - +0.6
2,784,071 + +0.6
2,784,084 - +0.6
2,784,092 + -1.8
2,784,100 - -1.0
2,784,100 - -1.0
2,784,144 + +0.6
2,784,157 - +0.6
2,784,159 + -0.4
2,784,159 + -0.4
2,784,215 - -0.4
2,784,217 - +0.6
2,784,359 + -1.0

Or see this region's nucleotide sequence