Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2591 and Dsui_2592 overlap by 1 nucleotides Dsui_2592 and Dsui_2593 are separated by 27 nucleotides Dsui_2593 and Dsui_2594 are separated by 12 nucleotides
Dsui_2591: Dsui_2591 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,746,022 to 2,747,608
_2591
Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720
_2592
Dsui_2593: Dsui_2593 - PilS N terminal protein, at 2,748,748 to 2,749,287
_2593
Dsui_2594: Dsui_2594 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,749,300 to 2,750,256
_2594
Position (kb)
2747
2748
2749 Strain fitness (log2 ratio)
-2
-1
0
1 at 2746.611 kb on - strand, within Dsui_2591 at 2746.761 kb on + strand, within Dsui_2591 at 2746.788 kb on - strand, within Dsui_2591 at 2746.802 kb on + strand at 2746.805 kb on - strand, within Dsui_2591 at 2746.887 kb on - strand, within Dsui_2591 at 2746.889 kb on + strand, within Dsui_2591 at 2746.907 kb on + strand, within Dsui_2591 at 2746.928 kb on - strand, within Dsui_2591 at 2746.974 kb on - strand, within Dsui_2591 at 2747.118 kb on + strand, within Dsui_2591 at 2747.157 kb on + strand, within Dsui_2591 at 2747.405 kb on - strand, within Dsui_2591 at 2747.534 kb on - strand at 2747.713 kb on + strand at 2747.721 kb on - strand, within Dsui_2592 at 2747.746 kb on - strand, within Dsui_2592 at 2747.771 kb on - strand, within Dsui_2592 at 2747.801 kb on - strand, within Dsui_2592 at 2747.989 kb on + strand, within Dsui_2592 at 2748.044 kb on - strand, within Dsui_2592 at 2748.044 kb on - strand, within Dsui_2592 at 2748.046 kb on + strand, within Dsui_2592 at 2748.065 kb on - strand, within Dsui_2592 at 2748.084 kb on + strand, within Dsui_2592 at 2748.261 kb on - strand, within Dsui_2592 at 2748.314 kb on - strand, within Dsui_2592 at 2748.314 kb on - strand, within Dsui_2592 at 2748.324 kb on - strand, within Dsui_2592 at 2748.334 kb on + strand, within Dsui_2592 at 2748.357 kb on + strand, within Dsui_2592 at 2748.373 kb on - strand, within Dsui_2592 at 2748.487 kb on - strand, within Dsui_2592 at 2748.638 kb on - strand at 2748.658 kb on - strand at 2748.669 kb on - strand at 2748.678 kb on + strand at 2748.683 kb on + strand at 2748.720 kb on + strand at 2748.818 kb on - strand, within Dsui_2593 at 2748.820 kb on - strand, within Dsui_2593 at 2748.834 kb on + strand, within Dsui_2593 at 2748.842 kb on - strand, within Dsui_2593 at 2748.882 kb on + strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.890 kb on - strand, within Dsui_2593 at 2748.895 kb on - strand, within Dsui_2593 at 2749.105 kb on + strand, within Dsui_2593 at 2749.126 kb on + strand, within Dsui_2593 at 2749.199 kb on - strand at 2749.210 kb on + strand, within Dsui_2593 at 2749.210 kb on + strand, within Dsui_2593 at 2749.218 kb on - strand, within Dsui_2593 at 2749.235 kb on - strand at 2749.309 kb on + strand at 2749.392 kb on + strand at 2749.400 kb on - strand, within Dsui_2594 at 2749.580 kb on + strand, within Dsui_2594 at 2749.704 kb on + strand, within Dsui_2594
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 2,746,611 - Dsui_2591 0.37 -0.5 2,746,761 + Dsui_2591 0.47 -0.5 2,746,788 - Dsui_2591 0.48 -0.5 2,746,802 + +0.5 2,746,805 - Dsui_2591 0.49 +0.5 2,746,887 - Dsui_2591 0.55 +0.5 2,746,889 + Dsui_2591 0.55 -1.1 2,746,907 + Dsui_2591 0.56 +0.5 2,746,928 - Dsui_2591 0.57 -2.7 2,746,974 - Dsui_2591 0.60 +0.5 2,747,118 + Dsui_2591 0.69 +0.5 2,747,157 + Dsui_2591 0.72 +0.5 2,747,405 - Dsui_2591 0.87 +0.5 2,747,534 - -0.5 2,747,713 + -0.5 2,747,721 - Dsui_2592 0.10 +0.5 2,747,746 - Dsui_2592 0.12 -1.8 2,747,771 - Dsui_2592 0.15 -0.5 2,747,801 - Dsui_2592 0.17 -0.5 2,747,989 + Dsui_2592 0.34 -1.1 2,748,044 - Dsui_2592 0.39 +0.5 2,748,044 - Dsui_2592 0.39 -1.1 2,748,046 + Dsui_2592 0.39 -1.8 2,748,065 - Dsui_2592 0.41 -1.5 2,748,084 + Dsui_2592 0.43 +0.5 2,748,261 - Dsui_2592 0.59 +0.5 2,748,314 - Dsui_2592 0.63 +0.5 2,748,314 - Dsui_2592 0.63 -0.5 2,748,324 - Dsui_2592 0.64 -1.5 2,748,334 + Dsui_2592 0.65 -0.5 2,748,357 + Dsui_2592 0.67 +0.5 2,748,373 - Dsui_2592 0.69 +0.5 2,748,487 - Dsui_2592 0.79 +0.5 2,748,638 - +0.5 2,748,658 - +0.5 2,748,669 - -0.5 2,748,678 + -0.5 2,748,683 + -0.5 2,748,720 + +0.5 2,748,818 - Dsui_2593 0.13 -2.1 2,748,820 - Dsui_2593 0.13 -0.5 2,748,834 + Dsui_2593 0.16 -1.5 2,748,842 - Dsui_2593 0.17 -1.1 2,748,882 + Dsui_2593 0.25 +0.5 2,748,890 - Dsui_2593 0.26 +0.5 2,748,890 - Dsui_2593 0.26 -0.5 2,748,890 - Dsui_2593 0.26 +0.5 2,748,895 - Dsui_2593 0.27 +0.5 2,749,105 + Dsui_2593 0.66 +0.5 2,749,126 + Dsui_2593 0.70 -0.5 2,749,199 - +0.5 2,749,210 + Dsui_2593 0.86 +0.5 2,749,210 + Dsui_2593 0.86 -1.1 2,749,218 - Dsui_2593 0.87 -0.5 2,749,235 - +0.5 2,749,309 + +0.5 2,749,392 + +0.5 2,749,400 - Dsui_2594 0.10 +0.5 2,749,580 + Dsui_2594 0.29 -1.9 2,749,704 + Dsui_2594 0.42 -1.1
Or see this region's nucleotide sequence