Strain Fitness in Dechlorosoma suillum PS around Dsui_2155

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2153 and Dsui_2154 are separated by 27 nucleotidesDsui_2154 and Dsui_2155 are separated by 269 nucleotidesDsui_2155 and Dsui_2156 are separated by 202 nucleotides Dsui_2153: Dsui_2153 - molybdopterin converting factor, subunit 1, at 2,283,922 to 2,284,173 _2153 Dsui_2154: Dsui_2154 - molybdopterin converting factor, large subunit, at 2,284,201 to 2,284,662 _2154 Dsui_2155: Dsui_2155 - hypothetical protein, at 2,284,932 to 2,285,822 _2155 Dsui_2156: Dsui_2156 - methyl-accepting chemotaxis protein, at 2,286,025 to 2,287,665 _2156 Position (kb) 2284 2285 2286Strain fitness (log2 ratio) -2 -1 0 1 2at 2283.966 kb on - strand, within Dsui_2153at 2283.991 kb on + strand, within Dsui_2153at 2284.104 kb on + strand, within Dsui_2153at 2284.454 kb on - strand, within Dsui_2154at 2284.462 kb on - strand, within Dsui_2154at 2284.491 kb on + strand, within Dsui_2154at 2284.793 kb on + strandat 2284.988 kb on + strandat 2285.062 kb on + strand, within Dsui_2155at 2285.078 kb on - strand, within Dsui_2155at 2285.107 kb on + strandat 2285.107 kb on + strand, within Dsui_2155at 2285.161 kb on - strand, within Dsui_2155at 2285.307 kb on - strandat 2285.358 kb on + strand, within Dsui_2155at 2285.366 kb on - strandat 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.502 kb on - strand, within Dsui_2155at 2285.563 kb on + strand, within Dsui_2155at 2285.621 kb on + strand, within Dsui_2155at 2285.726 kb on + strand, within Dsui_2155at 2285.763 kb on - strandat 2285.833 kb on + strandat 2285.962 kb on + strandat 2285.962 kb on + strandat 2285.962 kb on + strandat 2285.962 kb on + strandat 2285.962 kb on + strandat 2285.970 kb on - strandat 2285.970 kb on - strandat 2286.067 kb on + strandat 2286.132 kb on - strandat 2286.315 kb on + strand, within Dsui_2156at 2286.315 kb on + strand, within Dsui_2156at 2286.323 kb on - strand, within Dsui_2156at 2286.356 kb on - strand, within Dsui_2156at 2286.546 kb on + strand, within Dsui_2156at 2286.559 kb on + strand, within Dsui_2156at 2286.586 kb on + strand, within Dsui_2156at 2286.594 kb on - strand, within Dsui_2156at 2286.594 kb on - strand, within Dsui_2156at 2286.634 kb on - strand, within Dsui_2156at 2286.639 kb on - strand, within Dsui_2156at 2286.659 kb on - strand, within Dsui_2156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
remove
2,283,966 - Dsui_2153 0.17 -2.3
2,283,991 + Dsui_2153 0.27 -0.2
2,284,104 + Dsui_2153 0.72 -0.0
2,284,454 - Dsui_2154 0.55 +0.9
2,284,462 - Dsui_2154 0.56 +0.9
2,284,491 + Dsui_2154 0.63 +0.1
2,284,793 + +2.5
2,284,988 + -1.0
2,285,062 + Dsui_2155 0.15 -0.1
2,285,078 - Dsui_2155 0.16 +0.9
2,285,107 + -0.1
2,285,107 + Dsui_2155 0.20 -2.7
2,285,161 - Dsui_2155 0.26 +0.9
2,285,307 - +0.9
2,285,358 + Dsui_2155 0.48 -1.7
2,285,366 - +0.9
2,285,502 - Dsui_2155 0.64 -1.1
2,285,502 - Dsui_2155 0.64 +0.9
2,285,502 - Dsui_2155 0.64 +0.9
2,285,502 - Dsui_2155 0.64 -0.1
2,285,502 - Dsui_2155 0.64 -0.1
2,285,563 + Dsui_2155 0.71 -0.7
2,285,621 + Dsui_2155 0.77 -0.4
2,285,726 + Dsui_2155 0.89 -2.3
2,285,763 - -1.1
2,285,833 + +0.1
2,285,962 + +0.9
2,285,962 + -0.7
2,285,962 + -1.1
2,285,962 + -0.1
2,285,962 + -0.1
2,285,970 - -1.1
2,285,970 - -0.7
2,286,067 + -0.7
2,286,132 - -0.1
2,286,315 + Dsui_2156 0.18 -1.1
2,286,315 + Dsui_2156 0.18 -1.7
2,286,323 - Dsui_2156 0.18 +0.2
2,286,356 - Dsui_2156 0.20 -0.3
2,286,546 + Dsui_2156 0.32 -0.7
2,286,559 + Dsui_2156 0.33 +0.9
2,286,586 + Dsui_2156 0.34 +0.9
2,286,594 - Dsui_2156 0.35 -0.6
2,286,594 - Dsui_2156 0.35 +0.3
2,286,634 - Dsui_2156 0.37 +0.2
2,286,639 - Dsui_2156 0.37 +0.1
2,286,659 - Dsui_2156 0.39 +0.2

Or see this region's nucleotide sequence