Strain Fitness in Dechlorosoma suillum PS around Dsui_2101

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2099 and Dsui_2100 are separated by 294 nucleotidesDsui_2100 and Dsui_2101 are separated by 4 nucleotidesDsui_2101 and Dsui_2102 are separated by 3 nucleotidesDsui_2102 and Dsui_2103 are separated by 132 nucleotides Dsui_2099: Dsui_2099 - RNA polymerase sigma factor, sigma-70 family, at 2,223,869 to 2,224,462 _2099 Dsui_2100: Dsui_2100 - hypothetical protein, at 2,224,757 to 2,225,161 _2100 Dsui_2101: Dsui_2101 - hypothetical protein, at 2,225,166 to 2,225,657 _2101 Dsui_2102: Dsui_2102 - hypothetical protein, at 2,225,661 to 2,225,909 _2102 Dsui_2103: Dsui_2103 - hypothetical protein, at 2,226,042 to 2,226,308 _2103 Position (kb) 2225 2226Strain fitness (log2 ratio) -2 -1 0 1at 2224.169 kb on + strand, within Dsui_2099at 2224.178 kb on - strandat 2224.178 kb on - strand, within Dsui_2099at 2224.269 kb on + strandat 2224.311 kb on - strandat 2224.353 kb on - strand, within Dsui_2099at 2224.410 kb on + strandat 2224.467 kb on + strandat 2224.484 kb on - strandat 2224.484 kb on - strandat 2224.623 kb on + strandat 2224.631 kb on - strandat 2224.631 kb on - strandat 2224.664 kb on - strandat 2224.664 kb on - strandat 2224.715 kb on - strandat 2224.720 kb on + strandat 2224.883 kb on + strandat 2224.937 kb on + strand, within Dsui_2100at 2224.945 kb on - strand, within Dsui_2100at 2224.969 kb on - strandat 2225.183 kb on + strandat 2225.238 kb on + strand, within Dsui_2101at 2225.292 kb on - strand, within Dsui_2101at 2225.295 kb on + strand, within Dsui_2101at 2225.340 kb on + strand, within Dsui_2101at 2225.343 kb on - strand, within Dsui_2101at 2225.414 kb on + strand, within Dsui_2101at 2225.430 kb on + strand, within Dsui_2101at 2225.480 kb on + strandat 2225.585 kb on - strand, within Dsui_2101at 2225.617 kb on - strandat 2225.691 kb on - strand, within Dsui_2102at 2225.715 kb on + strandat 2225.715 kb on + strand, within Dsui_2102at 2225.715 kb on + strandat 2225.715 kb on + strandat 2225.718 kb on - strand, within Dsui_2102at 2225.723 kb on - strand, within Dsui_2102at 2225.723 kb on - strandat 2225.723 kb on - strandat 2225.723 kb on - strand, within Dsui_2102at 2225.723 kb on - strand, within Dsui_2102at 2225.723 kb on - strand, within Dsui_2102at 2225.723 kb on - strandat 2225.840 kb on - strand, within Dsui_2102at 2225.873 kb on - strand, within Dsui_2102at 2225.919 kb on + strandat 2226.024 kb on + strandat 2226.025 kb on + strandat 2226.067 kb on - strandat 2226.067 kb on - strandat 2226.095 kb on + strand, within Dsui_2103at 2226.242 kb on + strand, within Dsui_2103at 2226.247 kb on + strand, within Dsui_2103at 2226.250 kb on - strand, within Dsui_2103at 2226.255 kb on - strandat 2226.255 kb on - strand, within Dsui_2103at 2226.255 kb on - strandat 2226.263 kb on + strand, within Dsui_2103at 2226.303 kb on - strandat 2226.407 kb on + strandat 2226.439 kb on + strandat 2226.490 kb on - strandat 2226.528 kb on + strandat 2226.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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2,224,169 + Dsui_2099 0.51 -0.1
2,224,178 - +0.9
2,224,178 - Dsui_2099 0.52 +0.9
2,224,269 + +0.9
2,224,311 - +0.9
2,224,353 - Dsui_2099 0.81 -0.1
2,224,410 + -0.1
2,224,467 + -0.7
2,224,484 - -0.1
2,224,484 - +0.9
2,224,623 + +0.9
2,224,631 - +0.0
2,224,631 - +0.2
2,224,664 - -1.1
2,224,664 - -0.1
2,224,715 - +0.9
2,224,720 + +0.9
2,224,883 + -0.1
2,224,937 + Dsui_2100 0.44 -1.7
2,224,945 - Dsui_2100 0.46 -0.7
2,224,969 - +0.9
2,225,183 + -0.1
2,225,238 + Dsui_2101 0.15 -0.7
2,225,292 - Dsui_2101 0.26 -0.7
2,225,295 + Dsui_2101 0.26 -0.7
2,225,340 + Dsui_2101 0.35 +0.9
2,225,343 - Dsui_2101 0.36 +0.9
2,225,414 + Dsui_2101 0.50 -1.7
2,225,430 + Dsui_2101 0.54 +0.9
2,225,480 + +0.9
2,225,585 - Dsui_2101 0.85 -1.1
2,225,617 - -0.1
2,225,691 - Dsui_2102 0.12 -0.7
2,225,715 + +0.9
2,225,715 + Dsui_2102 0.22 -0.1
2,225,715 + +0.9
2,225,715 + -0.1
2,225,718 - Dsui_2102 0.23 -0.7
2,225,723 - Dsui_2102 0.25 +0.9
2,225,723 - +0.9
2,225,723 - +0.9
2,225,723 - Dsui_2102 0.25 -0.7
2,225,723 - Dsui_2102 0.25 +0.9
2,225,723 - Dsui_2102 0.25 -1.5
2,225,723 - +0.9
2,225,840 - Dsui_2102 0.72 -0.7
2,225,873 - Dsui_2102 0.85 -0.1
2,225,919 + -1.1
2,226,024 + -0.2
2,226,025 + -0.9
2,226,067 - -0.7
2,226,067 - +0.9
2,226,095 + Dsui_2103 0.20 +0.6
2,226,242 + Dsui_2103 0.75 +0.1
2,226,247 + Dsui_2103 0.77 +0.4
2,226,250 - Dsui_2103 0.78 -0.1
2,226,255 - -0.1
2,226,255 - Dsui_2103 0.80 -0.7
2,226,255 - +0.9
2,226,263 + Dsui_2103 0.83 +0.1
2,226,303 - +0.9
2,226,407 + -2.0
2,226,439 + +0.5
2,226,490 - +0.9
2,226,528 + -1.1
2,226,536 - -1.5

Or see this region's nucleotide sequence