Strain Fitness in Dechlorosoma suillum PS around Dsui_1849

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1848 and Dsui_1849 are separated by 51 nucleotidesDsui_1849 and Dsui_1850 are separated by 3 nucleotidesDsui_1850 and Dsui_1851 are separated by 319 nucleotides Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175 _1848 Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706 _1849 Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093 _1850 Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837 _1851 Position (kb) 1944 1945Strain fitness (log2 ratio) -1 0 1at 1943.299 kb on - strand, within Dsui_1848at 1943.463 kb on - strandat 1943.608 kb on + strandat 1943.621 kb on - strandat 1943.690 kb on - strandat 1943.695 kb on - strandat 1943.820 kb on + strandat 1943.835 kb on - strandat 1943.974 kb on + strand, within Dsui_1848at 1943.982 kb on - strand, within Dsui_1848at 1943.982 kb on - strand, within Dsui_1848at 1944.109 kb on + strandat 1944.145 kb on - strandat 1944.203 kb on - strandat 1944.225 kb on + strandat 1944.238 kb on - strandat 1944.239 kb on - strandat 1944.261 kb on + strandat 1944.261 kb on + strandat 1944.269 kb on - strandat 1944.648 kb on - strand, within Dsui_1849at 1944.716 kb on - strandat 1944.793 kb on - strand, within Dsui_1850at 1944.902 kb on - strand, within Dsui_1850at 1944.925 kb on - strand, within Dsui_1850at 1944.941 kb on + strand, within Dsui_1850at 1944.945 kb on - strand, within Dsui_1850at 1944.964 kb on + strandat 1944.964 kb on + strand, within Dsui_1850at 1944.972 kb on - strand, within Dsui_1850at 1945.291 kb on - strandat 1945.529 kb on + strandat 1945.633 kb on + strandat 1945.640 kb on + strandat 1945.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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1,943,299 - Dsui_1848 0.17 -0.4
1,943,463 - +0.6
1,943,608 + +0.6
1,943,621 - -0.4
1,943,690 - -0.4
1,943,695 - +0.6
1,943,820 + -0.4
1,943,835 - -0.4
1,943,974 + Dsui_1848 0.81 +0.6
1,943,982 - Dsui_1848 0.82 -0.4
1,943,982 - Dsui_1848 0.82 -0.4
1,944,109 + -0.4
1,944,145 - +0.6
1,944,203 - -1.4
1,944,225 + -0.4
1,944,238 - +0.6
1,944,239 - -1.4
1,944,261 + +0.6
1,944,261 + +0.6
1,944,269 - +0.6
1,944,648 - Dsui_1849 0.88 +0.6
1,944,716 - +0.6
1,944,793 - Dsui_1850 0.22 -0.2
1,944,902 - Dsui_1850 0.50 +0.8
1,944,925 - Dsui_1850 0.56 +0.6
1,944,941 + Dsui_1850 0.60 -1.4
1,944,945 - Dsui_1850 0.61 +0.7
1,944,964 + +0.6
1,944,964 + Dsui_1850 0.66 +0.6
1,944,972 - Dsui_1850 0.68 +0.7
1,945,291 - -0.4
1,945,529 + +0.6
1,945,633 + -1.4
1,945,640 + -0.4
1,945,648 - +0.6

Or see this region's nucleotide sequence