Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1830 and Dsui_1831 are separated by 520 nucleotides Dsui_1831 and Dsui_1832 are separated by 148 nucleotides
Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304
_1830
Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102
_1831
Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141
_1832
Position (kb)
1929
1930
1931
1932 Strain fitness (log2 ratio)
-2
-1
0
1 at 1928.843 kb on + strand, within Dsui_1830 at 1928.929 kb on + strand, within Dsui_1830 at 1928.931 kb on - strand, within Dsui_1830 at 1929.010 kb on - strand at 1929.232 kb on - strand, within Dsui_1830 at 1929.274 kb on + strand at 1929.292 kb on + strand at 1929.347 kb on + strand at 1929.501 kb on + strand at 1929.516 kb on + strand at 1929.550 kb on + strand at 1929.648 kb on + strand at 1929.685 kb on + strand at 1929.713 kb on - strand at 1929.720 kb on + strand at 1929.728 kb on - strand at 1929.728 kb on - strand at 1929.809 kb on + strand at 1930.165 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand at 1930.248 kb on + strand, within Dsui_1831 at 1930.248 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.299 kb on + strand, within Dsui_1831 at 1930.304 kb on + strand at 1930.357 kb on - strand, within Dsui_1831 at 1930.405 kb on + strand at 1930.449 kb on + strand, within Dsui_1831 at 1930.497 kb on - strand, within Dsui_1831 at 1930.573 kb on - strand, within Dsui_1831 at 1930.710 kb on + strand, within Dsui_1831 at 1930.739 kb on - strand at 1930.805 kb on - strand, within Dsui_1831 at 1930.811 kb on - strand, within Dsui_1831 at 1930.905 kb on + strand, within Dsui_1831 at 1930.938 kb on - strand, within Dsui_1831 at 1930.948 kb on + strand at 1930.970 kb on - strand at 1931.031 kb on - strand at 1931.031 kb on - strand at 1931.091 kb on - strand at 1931.106 kb on - strand at 1931.144 kb on + strand at 1931.156 kb on + strand at 1931.390 kb on - strand at 1931.570 kb on + strand, within Dsui_1832 at 1931.765 kb on - strand at 1931.809 kb on - strand, within Dsui_1832 at 1931.845 kb on - strand at 1931.863 kb on + strand at 1931.889 kb on + strand, within Dsui_1832 at 1931.905 kb on + strand, within Dsui_1832 at 1932.003 kb on - strand, within Dsui_1832 at 1932.030 kb on + strand, within Dsui_1832 at 1932.079 kb on - strand at 1932.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,928,843 + Dsui_1830 0.23 +0.6 1,928,929 + Dsui_1830 0.37 -0.4 1,928,931 - Dsui_1830 0.38 -1.0 1,929,010 - +0.6 1,929,232 - Dsui_1830 0.88 -1.0 1,929,274 + +0.6 1,929,292 + +0.6 1,929,347 + -1.4 1,929,501 + -0.4 1,929,516 + -0.4 1,929,550 + +0.6 1,929,648 + +0.6 1,929,685 + +0.6 1,929,713 - -1.4 1,929,720 + -1.4 1,929,728 - +0.6 1,929,728 - -0.4 1,929,809 + -1.0 1,930,165 + Dsui_1831 0.27 -1.0 1,930,169 + Dsui_1831 0.27 -1.0 1,930,169 + -0.4 1,930,248 + Dsui_1831 0.33 -2.6 1,930,248 + Dsui_1831 0.33 +0.6 1,930,274 + Dsui_1831 0.35 +0.6 1,930,274 + Dsui_1831 0.35 -2.2 1,930,299 + Dsui_1831 0.37 -1.0 1,930,304 + +0.6 1,930,357 - Dsui_1831 0.42 -2.0 1,930,405 + -1.0 1,930,449 + Dsui_1831 0.49 -0.4 1,930,497 - Dsui_1831 0.53 -0.4 1,930,573 - Dsui_1831 0.59 +0.6 1,930,710 + Dsui_1831 0.69 -1.0 1,930,739 - -0.4 1,930,805 - Dsui_1831 0.77 -1.0 1,930,811 - Dsui_1831 0.77 -0.4 1,930,905 + Dsui_1831 0.85 -0.4 1,930,938 - Dsui_1831 0.87 -0.4 1,930,948 + +0.6 1,930,970 - +0.6 1,931,031 - -0.4 1,931,031 - -2.7 1,931,091 - +0.6 1,931,106 - -2.0 1,931,144 + +0.6 1,931,156 + -1.4 1,931,390 - +0.6 1,931,570 + Dsui_1832 0.36 -1.7 1,931,765 - +0.6 1,931,809 - Dsui_1832 0.63 -0.4 1,931,845 - +0.6 1,931,863 + +0.6 1,931,889 + Dsui_1832 0.72 +0.6 1,931,905 + Dsui_1832 0.73 -1.0 1,932,003 - Dsui_1832 0.84 -0.4 1,932,030 + Dsui_1832 0.87 +0.1 1,932,079 - +0.6 1,932,098 + -0.4
Or see this region's nucleotide sequence