Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1824 and Dsui_1825 are separated by 455 nucleotides Dsui_1825 and Dsui_1826 are separated by 72 nucleotides Dsui_1826 and Dsui_1827 are separated by 211 nucleotides Dsui_1827 and Dsui_1828 are separated by 24 nucleotides
Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686
_1824
Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580
_1825
Dsui_1826: Dsui_1826 - NAD(P)H-dependent nitrite reductase, small subunit, at 1,926,653 to 1,926,961
_1826
Dsui_1827: Dsui_1827 - hypothetical protein, at 1,927,173 to 1,927,541
_1827
Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141
_1828
Position (kb)
1924
1925
1926
1927 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1923.142 kb on + strand at 1923.142 kb on + strand at 1923.160 kb on - strand at 1923.272 kb on - strand at 1923.301 kb on - strand, within Dsui_1824 at 1923.375 kb on + strand at 1923.378 kb on - strand, within Dsui_1824 at 1923.543 kb on - strand at 1923.756 kb on + strand at 1923.937 kb on + strand at 1923.964 kb on - strand at 1924.000 kb on - strand at 1924.073 kb on + strand at 1924.194 kb on + strand at 1924.194 kb on + strand at 1924.202 kb on - strand at 1924.217 kb on + strand at 1924.629 kb on + strand, within Dsui_1825 at 1924.648 kb on + strand, within Dsui_1825 at 1924.671 kb on + strand, within Dsui_1825 at 1924.692 kb on + strand, within Dsui_1825 at 1924.866 kb on + strand at 1924.873 kb on + strand at 1925.032 kb on + strand, within Dsui_1825 at 1925.032 kb on + strand at 1925.032 kb on + strand at 1925.032 kb on + strand at 1925.073 kb on - strand at 1925.094 kb on + strand, within Dsui_1825 at 1925.112 kb on - strand at 1925.241 kb on - strand at 1925.438 kb on - strand, within Dsui_1825 at 1925.451 kb on - strand, within Dsui_1825 at 1925.477 kb on - strand, within Dsui_1825 at 1925.483 kb on - strand at 1925.505 kb on - strand at 1925.559 kb on - strand at 1925.633 kb on - strand at 1925.634 kb on - strand at 1925.675 kb on - strand at 1925.690 kb on + strand at 1925.735 kb on + strand at 1925.919 kb on + strand, within Dsui_1825 at 1925.919 kb on + strand at 1925.927 kb on - strand, within Dsui_1825 at 1925.982 kb on - strand at 1926.014 kb on + strand at 1926.040 kb on + strand at 1926.171 kb on + strand at 1926.195 kb on - strand, within Dsui_1825 at 1926.310 kb on - strand at 1926.310 kb on - strand at 1926.367 kb on + strand at 1926.406 kb on + strand at 1926.438 kb on - strand at 1926.444 kb on + strand at 1926.477 kb on - strand at 1926.611 kb on + strand at 1926.721 kb on - strand at 1926.737 kb on + strand at 1926.845 kb on + strand at 1926.899 kb on - strand, within Dsui_1826 at 1926.909 kb on - strand, within Dsui_1826 at 1926.950 kb on + strand at 1926.957 kb on + strand at 1927.069 kb on + strand at 1927.086 kb on + strand at 1927.146 kb on + strand at 1927.165 kb on + strand at 1927.167 kb on - strand at 1927.257 kb on + strand, within Dsui_1827 at 1927.382 kb on + strand, within Dsui_1827 at 1927.427 kb on + strand, within Dsui_1827 at 1927.556 kb on + strand at 1927.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,923,142 + +0.6 1,923,142 + -0.4 1,923,160 - +0.6 1,923,272 - +0.6 1,923,301 - Dsui_1824 0.80 -0.4 1,923,375 + -0.4 1,923,378 - Dsui_1824 0.84 -1.4 1,923,543 - +0.6 1,923,756 + +0.6 1,923,937 + +0.6 1,923,964 - -1.8 1,924,000 - +0.3 1,924,073 + +0.6 1,924,194 + -0.4 1,924,194 + +0.6 1,924,202 - -1.0 1,924,217 + -0.4 1,924,629 + Dsui_1825 0.20 -2.6 1,924,648 + Dsui_1825 0.21 +0.6 1,924,671 + Dsui_1825 0.22 -2.9 1,924,692 + Dsui_1825 0.23 -0.4 1,924,866 + -0.4 1,924,873 + +0.6 1,925,032 + Dsui_1825 0.36 -1.0 1,925,032 + +0.6 1,925,032 + -0.4 1,925,032 + +0.6 1,925,073 - +0.6 1,925,094 + Dsui_1825 0.39 -2.2 1,925,112 - +0.6 1,925,241 - -1.4 1,925,438 - Dsui_1825 0.53 -1.4 1,925,451 - Dsui_1825 0.54 +0.6 1,925,477 - Dsui_1825 0.55 +0.6 1,925,483 - -1.0 1,925,505 - +0.6 1,925,559 - +0.6 1,925,633 - -0.4 1,925,634 - +0.6 1,925,675 - +0.6 1,925,690 + +0.6 1,925,735 + +0.6 1,925,919 + Dsui_1825 0.73 -0.4 1,925,919 + -0.4 1,925,927 - Dsui_1825 0.73 +0.6 1,925,982 - +0.6 1,926,014 + +0.6 1,926,040 + +0.6 1,926,171 + +0.6 1,926,195 - Dsui_1825 0.84 -1.7 1,926,310 - -0.4 1,926,310 - +0.6 1,926,367 + -2.0 1,926,406 + -0.4 1,926,438 - -0.4 1,926,444 + -1.0 1,926,477 - -0.4 1,926,611 + +0.6 1,926,721 - -0.4 1,926,737 + +0.6 1,926,845 + -1.0 1,926,899 - Dsui_1826 0.80 +0.6 1,926,909 - Dsui_1826 0.83 -1.4 1,926,950 + +0.6 1,926,957 + -0.1 1,927,069 + -0.1 1,927,086 + -0.1 1,927,146 + -0.1 1,927,165 + -0.0 1,927,167 - -1.0 1,927,257 + Dsui_1827 0.23 -0.2 1,927,382 + Dsui_1827 0.57 -0.4 1,927,427 + Dsui_1827 0.69 +0.4 1,927,556 + +0.1 1,927,564 - -2.4
Or see this region's nucleotide sequence