Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1823 and Dsui_1824 are separated by 118 nucleotides Dsui_1824 and Dsui_1825 are separated by 455 nucleotides
Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618
_1823
Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686
_1824
Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580
_1825
Position (kb)
1921
1922
1923
1924 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1920.796 kb on + strand at 1920.917 kb on - strand, within Dsui_1823 at 1920.985 kb on - strand at 1921.043 kb on + strand at 1921.066 kb on + strand at 1921.091 kb on + strand, within Dsui_1823 at 1921.160 kb on + strand, within Dsui_1823 at 1921.203 kb on + strand, within Dsui_1823 at 1921.272 kb on - strand, within Dsui_1823 at 1921.610 kb on + strand at 1921.645 kb on + strand at 1921.673 kb on - strand at 1921.720 kb on - strand at 1921.722 kb on + strand at 1921.813 kb on + strand at 1922.065 kb on - strand at 1922.125 kb on + strand, within Dsui_1824 at 1922.145 kb on - strand, within Dsui_1824 at 1922.223 kb on + strand at 1922.486 kb on + strand, within Dsui_1824 at 1922.524 kb on - strand, within Dsui_1824 at 1922.531 kb on + strand at 1922.539 kb on - strand at 1922.539 kb on - strand, within Dsui_1824 at 1922.539 kb on - strand at 1922.563 kb on - strand at 1922.569 kb on - strand, within Dsui_1824 at 1922.643 kb on + strand at 1922.705 kb on + strand, within Dsui_1824 at 1922.722 kb on + strand, within Dsui_1824 at 1922.735 kb on - strand, within Dsui_1824 at 1922.761 kb on - strand, within Dsui_1824 at 1922.780 kb on - strand, within Dsui_1824 at 1922.810 kb on + strand at 1922.818 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand at 1922.981 kb on + strand at 1922.989 kb on - strand at 1923.024 kb on + strand at 1923.032 kb on - strand, within Dsui_1824 at 1923.072 kb on + strand at 1923.115 kb on - strand at 1923.142 kb on + strand at 1923.142 kb on + strand at 1923.160 kb on - strand at 1923.272 kb on - strand at 1923.301 kb on - strand, within Dsui_1824 at 1923.375 kb on + strand at 1923.378 kb on - strand, within Dsui_1824 at 1923.543 kb on - strand at 1923.756 kb on + strand at 1923.937 kb on + strand at 1923.964 kb on - strand at 1924.000 kb on - strand at 1924.073 kb on + strand at 1924.194 kb on + strand at 1924.194 kb on + strand at 1924.202 kb on - strand at 1924.217 kb on + strand at 1924.629 kb on + strand, within Dsui_1825 at 1924.648 kb on + strand, within Dsui_1825 at 1924.671 kb on + strand, within Dsui_1825
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,920,796 + -0.4 1,920,917 - Dsui_1823 0.21 -1.8 1,920,985 - +0.6 1,921,043 + +0.6 1,921,066 + +0.6 1,921,091 + Dsui_1823 0.41 -0.4 1,921,160 + Dsui_1823 0.49 -1.0 1,921,203 + Dsui_1823 0.53 -0.4 1,921,272 - Dsui_1823 0.61 -1.0 1,921,610 + +0.6 1,921,645 + -1.0 1,921,673 - +0.6 1,921,720 - -0.4 1,921,722 + -0.4 1,921,813 + +0.6 1,922,065 - +0.6 1,922,125 + Dsui_1824 0.20 +0.6 1,922,145 - Dsui_1824 0.21 -0.4 1,922,223 + +0.6 1,922,486 + Dsui_1824 0.38 -1.8 1,922,524 - Dsui_1824 0.40 -0.4 1,922,531 + +0.6 1,922,539 - +0.6 1,922,539 - Dsui_1824 0.41 +0.6 1,922,539 - +0.6 1,922,563 - +0.6 1,922,569 - Dsui_1824 0.43 +0.6 1,922,643 + -1.8 1,922,705 + Dsui_1824 0.50 -1.8 1,922,722 + Dsui_1824 0.51 -1.0 1,922,735 - Dsui_1824 0.51 +0.6 1,922,761 - Dsui_1824 0.53 -2.0 1,922,780 - Dsui_1824 0.53 -0.4 1,922,810 + -0.4 1,922,818 - Dsui_1824 0.55 -0.4 1,922,823 - Dsui_1824 0.56 -1.0 1,922,823 - Dsui_1824 0.56 -1.8 1,922,823 - -1.0 1,922,981 + -1.0 1,922,989 - +0.6 1,923,024 + +0.6 1,923,032 - Dsui_1824 0.66 -1.0 1,923,072 + -0.4 1,923,115 - +0.6 1,923,142 + +0.6 1,923,142 + -0.4 1,923,160 - +0.6 1,923,272 - +0.6 1,923,301 - Dsui_1824 0.80 -0.4 1,923,375 + -0.4 1,923,378 - Dsui_1824 0.84 -1.4 1,923,543 - +0.6 1,923,756 + +0.6 1,923,937 + +0.6 1,923,964 - -1.8 1,924,000 - +0.3 1,924,073 + +0.6 1,924,194 + -0.4 1,924,194 + +0.6 1,924,202 - -1.0 1,924,217 + -0.4 1,924,629 + Dsui_1825 0.20 -2.6 1,924,648 + Dsui_1825 0.21 +0.6 1,924,671 + Dsui_1825 0.22 -2.9
Or see this region's nucleotide sequence