Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1740 and Dsui_1741 are separated by 57 nucleotides Dsui_1741 and Dsui_1742 are separated by 30 nucleotides Dsui_1742 and Dsui_1743 overlap by 1 nucleotides
Dsui_1740: Dsui_1740 - flagellar rod assembly protein/muramidase FlgJ, at 1,828,348 to 1,829,346
_1740
Dsui_1741: Dsui_1741 - flagellar hook-associated protein FlgK, at 1,829,404 to 1,831,581
_1741
Dsui_1742: Dsui_1742 - flagellar hook-associated protein 3, at 1,831,612 to 1,832,580
_1742
Dsui_1743: Dsui_1743 - hypothetical protein, at 1,832,580 to 1,833,044
_1743
Position (kb)
1829
1830
1831
1832 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1828.449 kb on - strand, within Dsui_1740 at 1828.540 kb on + strand, within Dsui_1740 at 1828.548 kb on - strand, within Dsui_1740 at 1828.548 kb on - strand, within Dsui_1740 at 1828.551 kb on + strand, within Dsui_1740 at 1828.608 kb on + strand, within Dsui_1740 at 1828.626 kb on + strand, within Dsui_1740 at 1828.692 kb on + strand, within Dsui_1740 at 1828.725 kb on - strand, within Dsui_1740 at 1828.735 kb on + strand, within Dsui_1740 at 1828.759 kb on + strand, within Dsui_1740 at 1828.798 kb on - strand, within Dsui_1740 at 1828.856 kb on - strand, within Dsui_1740 at 1829.111 kb on + strand, within Dsui_1740 at 1829.116 kb on + strand, within Dsui_1740 at 1829.116 kb on + strand, within Dsui_1740 at 1829.124 kb on - strand, within Dsui_1740 at 1829.145 kb on + strand, within Dsui_1740 at 1829.177 kb on + strand, within Dsui_1740 at 1829.220 kb on - strand, within Dsui_1740 at 1829.275 kb on + strand at 1829.275 kb on + strand at 1829.275 kb on + strand at 1829.297 kb on - strand at 1829.335 kb on + strand at 1829.335 kb on + strand at 1829.335 kb on + strand at 1829.348 kb on - strand at 1829.364 kb on - strand at 1829.389 kb on + strand at 1829.409 kb on - strand at 1829.471 kb on - strand at 1829.505 kb on - strand at 1829.510 kb on + strand at 1829.519 kb on + strand at 1829.527 kb on - strand at 1829.537 kb on - strand at 1829.615 kb on - strand at 1829.637 kb on + strand, within Dsui_1741 at 1829.637 kb on + strand, within Dsui_1741 at 1829.651 kb on - strand, within Dsui_1741 at 1829.651 kb on - strand, within Dsui_1741 at 1829.745 kb on + strand, within Dsui_1741 at 1829.792 kb on - strand, within Dsui_1741 at 1829.814 kb on + strand, within Dsui_1741 at 1829.815 kb on + strand, within Dsui_1741 at 1829.820 kb on + strand, within Dsui_1741 at 1829.823 kb on - strand, within Dsui_1741 at 1829.829 kb on - strand, within Dsui_1741 at 1829.874 kb on - strand, within Dsui_1741 at 1829.889 kb on + strand, within Dsui_1741 at 1829.956 kb on + strand, within Dsui_1741 at 1829.972 kb on + strand, within Dsui_1741 at 1829.979 kb on - strand, within Dsui_1741 at 1829.980 kb on - strand, within Dsui_1741 at 1829.985 kb on + strand, within Dsui_1741 at 1830.005 kb on + strand, within Dsui_1741 at 1830.040 kb on + strand, within Dsui_1741 at 1830.061 kb on + strand, within Dsui_1741 at 1830.123 kb on + strand, within Dsui_1741 at 1830.126 kb on - strand, within Dsui_1741 at 1830.238 kb on - strand, within Dsui_1741 at 1830.341 kb on + strand, within Dsui_1741 at 1830.349 kb on - strand, within Dsui_1741 at 1830.351 kb on + strand, within Dsui_1741 at 1830.420 kb on + strand, within Dsui_1741 at 1830.579 kb on + strand, within Dsui_1741 at 1830.588 kb on - strand, within Dsui_1741 at 1830.612 kb on + strand, within Dsui_1741 at 1830.620 kb on - strand, within Dsui_1741 at 1830.634 kb on + strand, within Dsui_1741 at 1830.696 kb on - strand, within Dsui_1741 at 1830.709 kb on + strand, within Dsui_1741 at 1830.709 kb on + strand, within Dsui_1741 at 1830.710 kb on + strand, within Dsui_1741 at 1830.716 kb on - strand, within Dsui_1741 at 1831.074 kb on + strand, within Dsui_1741 at 1831.093 kb on + strand, within Dsui_1741 at 1831.104 kb on + strand at 1831.106 kb on + strand, within Dsui_1741 at 1831.106 kb on + strand, within Dsui_1741 at 1831.117 kb on - strand, within Dsui_1741 at 1831.150 kb on + strand, within Dsui_1741 at 1831.153 kb on - strand, within Dsui_1741 at 1831.164 kb on + strand, within Dsui_1741 at 1831.173 kb on - strand at 1831.181 kb on + strand, within Dsui_1741 at 1831.349 kb on - strand, within Dsui_1741 at 1831.349 kb on - strand, within Dsui_1741 at 1831.362 kb on - strand, within Dsui_1741 at 1831.480 kb on + strand at 1831.491 kb on + strand at 1831.491 kb on + strand at 1831.497 kb on - strand at 1831.501 kb on + strand at 1831.517 kb on - strand at 1831.540 kb on + strand at 1831.541 kb on + strand at 1831.541 kb on + strand at 1831.549 kb on - strand at 1831.549 kb on - strand at 1831.559 kb on - strand at 1831.561 kb on + strand at 1831.606 kb on + strand at 1831.606 kb on + strand at 1831.614 kb on - strand at 1831.632 kb on + strand at 1831.640 kb on - strand at 1831.675 kb on + strand at 1831.680 kb on + strand at 1831.688 kb on + strand at 1831.688 kb on - strand at 1831.696 kb on - strand at 1831.724 kb on + strand, within Dsui_1742 at 1831.811 kb on - strand, within Dsui_1742 at 1831.823 kb on - strand, within Dsui_1742 at 1831.823 kb on - strand, within Dsui_1742 at 1831.837 kb on + strand, within Dsui_1742 at 1831.867 kb on - strand, within Dsui_1742 at 1831.892 kb on - strand, within Dsui_1742 at 1831.971 kb on + strand, within Dsui_1742 at 1832.006 kb on + strand, within Dsui_1742 at 1832.006 kb on + strand, within Dsui_1742 at 1832.034 kb on - strand, within Dsui_1742 at 1832.067 kb on - strand, within Dsui_1742 at 1832.071 kb on + strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.218 kb on + strand, within Dsui_1742 at 1832.307 kb on - strand, within Dsui_1742 at 1832.311 kb on + strand, within Dsui_1742 at 1832.319 kb on - strand, within Dsui_1742 at 1832.344 kb on + strand, within Dsui_1742 at 1832.437 kb on + strand, within Dsui_1742 at 1832.472 kb on + strand, within Dsui_1742 at 1832.488 kb on - strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.549 kb on + strand at 1832.555 kb on + strand at 1832.555 kb on + strand at 1832.563 kb on - strand at 1832.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,828,449 - Dsui_1740 0.10 -0.5 1,828,540 + Dsui_1740 0.19 -0.6 1,828,548 - Dsui_1740 0.20 +0.5 1,828,548 - Dsui_1740 0.20 +0.5 1,828,551 + Dsui_1740 0.20 -0.2 1,828,608 + Dsui_1740 0.26 -0.5 1,828,626 + Dsui_1740 0.28 -0.8 1,828,692 + Dsui_1740 0.34 -0.5 1,828,725 - Dsui_1740 0.38 +0.5 1,828,735 + Dsui_1740 0.39 -0.9 1,828,759 + Dsui_1740 0.41 -0.5 1,828,798 - Dsui_1740 0.45 -0.5 1,828,856 - Dsui_1740 0.51 -2.0 1,829,111 + Dsui_1740 0.76 -0.7 1,829,116 + Dsui_1740 0.77 -0.8 1,829,116 + Dsui_1740 0.77 -0.4 1,829,124 - Dsui_1740 0.78 -0.5 1,829,145 + Dsui_1740 0.80 -0.3 1,829,177 + Dsui_1740 0.83 -0.7 1,829,220 - Dsui_1740 0.87 -1.0 1,829,275 + -0.5 1,829,275 + -0.1 1,829,275 + +0.1 1,829,297 - -1.0 1,829,335 + -0.3 1,829,335 + -0.1 1,829,335 + -0.6 1,829,348 - +0.5 1,829,364 - -0.5 1,829,389 + -1.2 1,829,409 - -0.5 1,829,471 - +0.5 1,829,505 - -0.5 1,829,510 + +0.5 1,829,519 + +0.5 1,829,527 - +0.5 1,829,537 - -0.5 1,829,615 - -2.9 1,829,637 + Dsui_1741 0.11 +0.5 1,829,637 + Dsui_1741 0.11 +0.5 1,829,651 - Dsui_1741 0.11 -0.5 1,829,651 - Dsui_1741 0.11 -2.3 1,829,745 + Dsui_1741 0.16 +0.5 1,829,792 - Dsui_1741 0.18 +0.5 1,829,814 + Dsui_1741 0.19 -0.5 1,829,815 + Dsui_1741 0.19 +0.5 1,829,820 + Dsui_1741 0.19 -2.9 1,829,823 - Dsui_1741 0.19 +0.5 1,829,829 - Dsui_1741 0.20 -0.5 1,829,874 - Dsui_1741 0.22 -0.5 1,829,889 + Dsui_1741 0.22 +0.5 1,829,956 + Dsui_1741 0.25 -0.5 1,829,972 + Dsui_1741 0.26 +0.5 1,829,979 - Dsui_1741 0.26 +0.5 1,829,980 - Dsui_1741 0.26 +0.5 1,829,985 + Dsui_1741 0.27 +0.5 1,830,005 + Dsui_1741 0.28 -0.5 1,830,040 + Dsui_1741 0.29 +0.5 1,830,061 + Dsui_1741 0.30 +0.5 1,830,123 + Dsui_1741 0.33 -0.5 1,830,126 - Dsui_1741 0.33 -0.5 1,830,238 - Dsui_1741 0.38 -1.0 1,830,341 + Dsui_1741 0.43 -0.5 1,830,349 - Dsui_1741 0.43 -0.5 1,830,351 + Dsui_1741 0.43 +0.5 1,830,420 + Dsui_1741 0.47 +0.5 1,830,579 + Dsui_1741 0.54 -1.5 1,830,588 - Dsui_1741 0.54 -0.9 1,830,612 + Dsui_1741 0.55 +0.5 1,830,620 - Dsui_1741 0.56 +0.2 1,830,634 + Dsui_1741 0.56 +0.5 1,830,696 - Dsui_1741 0.59 -0.1 1,830,709 + Dsui_1741 0.60 -3.3 1,830,709 + Dsui_1741 0.60 -2.0 1,830,710 + Dsui_1741 0.60 -2.5 1,830,716 - Dsui_1741 0.60 -1.8 1,831,074 + Dsui_1741 0.77 +0.5 1,831,093 + Dsui_1741 0.78 -1.5 1,831,104 + +0.5 1,831,106 + Dsui_1741 0.78 +0.5 1,831,106 + Dsui_1741 0.78 -0.5 1,831,117 - Dsui_1741 0.79 +0.5 1,831,150 + Dsui_1741 0.80 -0.5 1,831,153 - Dsui_1741 0.80 +0.5 1,831,164 + Dsui_1741 0.81 +0.5 1,831,173 - +0.5 1,831,181 + Dsui_1741 0.82 +0.5 1,831,349 - Dsui_1741 0.89 +0.5 1,831,349 - Dsui_1741 0.89 -0.5 1,831,362 - Dsui_1741 0.90 +0.5 1,831,480 + +0.5 1,831,491 + +0.5 1,831,491 + -0.5 1,831,497 - -1.5 1,831,501 + +0.5 1,831,517 - -0.2 1,831,540 + +0.5 1,831,541 + -1.5 1,831,541 + -1.0 1,831,549 - +0.5 1,831,549 - +0.5 1,831,559 - -1.5 1,831,561 + -1.5 1,831,606 + +0.5 1,831,606 + -1.0 1,831,614 - -0.5 1,831,632 + +0.5 1,831,640 - -2.8 1,831,675 + -2.3 1,831,680 + +0.5 1,831,688 + -0.2 1,831,688 - -0.5 1,831,696 - -2.3 1,831,724 + Dsui_1742 0.12 -2.5 1,831,811 - Dsui_1742 0.21 -0.5 1,831,823 - Dsui_1742 0.22 +0.5 1,831,823 - Dsui_1742 0.22 -1.5 1,831,837 + Dsui_1742 0.23 -1.0 1,831,867 - Dsui_1742 0.26 -1.5 1,831,892 - Dsui_1742 0.29 -1.0 1,831,971 + Dsui_1742 0.37 -1.0 1,832,006 + Dsui_1742 0.41 +0.5 1,832,006 + Dsui_1742 0.41 -1.6 1,832,034 - Dsui_1742 0.44 +0.5 1,832,067 - Dsui_1742 0.47 -1.8 1,832,071 + Dsui_1742 0.47 +0.5 1,832,123 - Dsui_1742 0.53 -1.8 1,832,123 - Dsui_1742 0.53 +0.5 1,832,213 + Dsui_1742 0.62 +0.5 1,832,213 + Dsui_1742 0.62 +0.5 1,832,213 + Dsui_1742 0.62 -0.5 1,832,213 + Dsui_1742 0.62 -0.5 1,832,213 + Dsui_1742 0.62 -1.5 1,832,213 + Dsui_1742 0.62 +0.5 1,832,218 + Dsui_1742 0.63 +0.5 1,832,307 - Dsui_1742 0.72 +0.5 1,832,311 + Dsui_1742 0.72 -1.5 1,832,319 - Dsui_1742 0.73 +0.5 1,832,344 + Dsui_1742 0.76 -1.0 1,832,437 + Dsui_1742 0.85 -1.0 1,832,472 + Dsui_1742 0.89 -0.4 1,832,488 - +0.6 1,832,517 + -0.2 1,832,517 + -1.0 1,832,517 + -0.4 1,832,517 + -0.4 1,832,525 - +0.6 1,832,525 - -2.3 1,832,525 - -1.8 1,832,549 + -0.6 1,832,555 + -1.3 1,832,555 + -0.9 1,832,563 - -1.4 1,832,563 - -0.8
Or see this region's nucleotide sequence