Strain Fitness in Dechlorosoma suillum PS around Dsui_1555

Experiment: ALP with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1554 and Dsui_1555 are separated by 196 nucleotidesDsui_1555 and Dsui_1556 are separated by 6 nucleotides Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519 _1554 Dsui_1555: Dsui_1555 - cation/multidrug efflux pump, at 1,619,716 to 1,622,787 _1555 Dsui_1556: Dsui_1556 - RND family efflux transporter, MFP subunit, at 1,622,794 to 1,623,990 _1556 Position (kb) 1619 1620 1621 1622 1623Strain fitness (log2 ratio) -3 -2 -1 0 1at 1618.853 kb on - strandat 1618.984 kb on - strand, within Dsui_1554at 1619.078 kb on - strandat 1619.106 kb on - strand, within Dsui_1554at 1619.145 kb on - strand, within Dsui_1554at 1619.237 kb on + strandat 1619.248 kb on + strandat 1619.330 kb on - strandat 1619.789 kb on - strandat 1619.852 kb on - strandat 1620.057 kb on + strand, within Dsui_1555at 1620.065 kb on - strand, within Dsui_1555at 1620.072 kb on + strand, within Dsui_1555at 1620.090 kb on + strand, within Dsui_1555at 1620.182 kb on + strand, within Dsui_1555at 1620.182 kb on + strand, within Dsui_1555at 1620.584 kb on - strand, within Dsui_1555at 1620.626 kb on - strand, within Dsui_1555at 1620.685 kb on + strand, within Dsui_1555at 1620.775 kb on - strand, within Dsui_1555at 1620.968 kb on + strand, within Dsui_1555at 1621.123 kb on - strand, within Dsui_1555at 1621.148 kb on + strand, within Dsui_1555at 1621.156 kb on - strand, within Dsui_1555at 1621.185 kb on - strand, within Dsui_1555at 1621.192 kb on + strand, within Dsui_1555at 1621.256 kb on + strand, within Dsui_1555at 1621.351 kb on + strand, within Dsui_1555at 1621.359 kb on - strand, within Dsui_1555at 1621.475 kb on - strandat 1621.520 kb on - strand, within Dsui_1555at 1621.520 kb on - strand, within Dsui_1555at 1621.691 kb on + strand, within Dsui_1555at 1621.763 kb on - strand, within Dsui_1555at 1621.903 kb on - strand, within Dsui_1555at 1621.905 kb on + strand, within Dsui_1555at 1622.093 kb on + strand, within Dsui_1555at 1622.093 kb on + strand, within Dsui_1555at 1622.101 kb on - strand, within Dsui_1555at 1622.101 kb on - strand, within Dsui_1555at 1622.474 kb on - strand, within Dsui_1555at 1622.584 kb on + strandat 1622.696 kb on - strandat 1622.735 kb on - strandat 1622.759 kb on - strandat 1623.043 kb on - strand, within Dsui_1556at 1623.171 kb on + strand, within Dsui_1556at 1623.171 kb on + strand, within Dsui_1556at 1623.348 kb on + strandat 1623.507 kb on + strand, within Dsui_1556at 1623.551 kb on - strand, within Dsui_1556at 1623.605 kb on + strand, within Dsui_1556at 1623.611 kb on + strand, within Dsui_1556at 1623.652 kb on - strand, within Dsui_1556at 1623.679 kb on - strand, within Dsui_1556at 1623.709 kb on + strand, within Dsui_1556

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml
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1,618,853 - +0.5
1,618,984 - Dsui_1554 0.81 -0.5
1,619,078 - +0.5
1,619,106 - Dsui_1554 0.85 +0.5
1,619,145 - Dsui_1554 0.87 -1.8
1,619,237 + +0.5
1,619,248 + -0.5
1,619,330 - +0.5
1,619,789 - -0.6
1,619,852 - -0.5
1,620,057 + Dsui_1555 0.11 +0.5
1,620,065 - Dsui_1555 0.11 -0.5
1,620,072 + Dsui_1555 0.12 +0.5
1,620,090 + Dsui_1555 0.12 -1.1
1,620,182 + Dsui_1555 0.15 -1.5
1,620,182 + Dsui_1555 0.15 -0.5
1,620,584 - Dsui_1555 0.28 +0.5
1,620,626 - Dsui_1555 0.30 -0.5
1,620,685 + Dsui_1555 0.32 +0.5
1,620,775 - Dsui_1555 0.34 -0.6
1,620,968 + Dsui_1555 0.41 -2.7
1,621,123 - Dsui_1555 0.46 -0.8
1,621,148 + Dsui_1555 0.47 +0.5
1,621,156 - Dsui_1555 0.47 -0.7
1,621,185 - Dsui_1555 0.48 -0.8
1,621,192 + Dsui_1555 0.48 -1.1
1,621,256 + Dsui_1555 0.50 +0.5
1,621,351 + Dsui_1555 0.53 -0.5
1,621,359 - Dsui_1555 0.53 -0.9
1,621,475 - +1.5
1,621,520 - Dsui_1555 0.59 -1.3
1,621,520 - Dsui_1555 0.59 -0.9
1,621,691 + Dsui_1555 0.64 -1.5
1,621,763 - Dsui_1555 0.67 +0.5
1,621,903 - Dsui_1555 0.71 -0.6
1,621,905 + Dsui_1555 0.71 +0.5
1,622,093 + Dsui_1555 0.77 -1.1
1,622,093 + Dsui_1555 0.77 -1.1
1,622,101 - Dsui_1555 0.78 -0.3
1,622,101 - Dsui_1555 0.78 -0.8
1,622,474 - Dsui_1555 0.90 -0.1
1,622,584 + -1.8
1,622,696 - -0.4
1,622,735 - +0.3
1,622,759 - +0.2
1,623,043 - Dsui_1556 0.21 -1.0
1,623,171 + Dsui_1556 0.31 -0.5
1,623,171 + Dsui_1556 0.31 -2.5
1,623,348 + +0.5
1,623,507 + Dsui_1556 0.60 +0.5
1,623,551 - Dsui_1556 0.63 -0.3
1,623,605 + Dsui_1556 0.68 -1.1
1,623,611 + Dsui_1556 0.68 -0.5
1,623,652 - Dsui_1556 0.72 -0.2
1,623,679 - Dsui_1556 0.74 -0.6
1,623,709 + Dsui_1556 0.76 -2.9

Or see this region's nucleotide sequence