Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1552 and Dsui_1553 are separated by 1 nucleotides Dsui_1553 and Dsui_1554 are separated by 61 nucleotides Dsui_1554 and Dsui_1555 are separated by 196 nucleotides
Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259
_1552
Dsui_1553: Dsui_1553 - regulator of competence-specific genes, at 1,616,261 to 1,616,635
_1553
Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519
_1554
Dsui_1555: Dsui_1555 - cation/multidrug efflux pump, at 1,619,716 to 1,622,787
_1555
Position (kb)
1616
1617
1618
1619
1620 Strain fitness (log2 ratio)
-2
-1
0
1 at 1616.279 kb on - strand at 1616.317 kb on - strand, within Dsui_1553 at 1616.442 kb on + strand, within Dsui_1553 at 1616.466 kb on + strand, within Dsui_1553 at 1616.576 kb on - strand at 1616.935 kb on - strand at 1617.172 kb on + strand, within Dsui_1554 at 1617.248 kb on + strand, within Dsui_1554 at 1617.257 kb on - strand, within Dsui_1554 at 1617.285 kb on + strand, within Dsui_1554 at 1617.320 kb on + strand, within Dsui_1554 at 1617.392 kb on + strand, within Dsui_1554 at 1617.392 kb on + strand, within Dsui_1554 at 1617.400 kb on - strand, within Dsui_1554 at 1617.468 kb on + strand at 1617.541 kb on - strand, within Dsui_1554 at 1617.547 kb on + strand, within Dsui_1554 at 1617.614 kb on + strand at 1617.640 kb on + strand, within Dsui_1554 at 1617.661 kb on + strand, within Dsui_1554 at 1617.887 kb on - strand at 1617.933 kb on - strand, within Dsui_1554 at 1617.993 kb on + strand at 1617.993 kb on + strand, within Dsui_1554 at 1618.143 kb on - strand, within Dsui_1554 at 1618.278 kb on - strand, within Dsui_1554 at 1618.357 kb on - strand, within Dsui_1554 at 1618.387 kb on - strand, within Dsui_1554 at 1618.394 kb on + strand, within Dsui_1554 at 1618.402 kb on - strand, within Dsui_1554 at 1618.468 kb on + strand, within Dsui_1554 at 1618.501 kb on - strand, within Dsui_1554 at 1618.609 kb on - strand at 1618.611 kb on + strand, within Dsui_1554 at 1618.664 kb on + strand at 1618.853 kb on - strand at 1618.984 kb on - strand, within Dsui_1554 at 1619.078 kb on - strand at 1619.106 kb on - strand, within Dsui_1554 at 1619.145 kb on - strand, within Dsui_1554 at 1619.237 kb on + strand at 1619.248 kb on + strand at 1619.330 kb on - strand at 1619.789 kb on - strand at 1619.852 kb on - strand at 1620.057 kb on + strand, within Dsui_1555 at 1620.065 kb on - strand, within Dsui_1555 at 1620.072 kb on + strand, within Dsui_1555 at 1620.090 kb on + strand, within Dsui_1555 at 1620.182 kb on + strand, within Dsui_1555 at 1620.182 kb on + strand, within Dsui_1555
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,616,279 - +0.5 1,616,317 - Dsui_1553 0.15 -2.1 1,616,442 + Dsui_1553 0.48 -0.3 1,616,466 + Dsui_1553 0.55 -1.8 1,616,576 - -0.5 1,616,935 - +0.5 1,617,172 + Dsui_1554 0.17 -0.1 1,617,248 + Dsui_1554 0.20 +0.5 1,617,257 - Dsui_1554 0.20 +0.5 1,617,285 + Dsui_1554 0.21 +0.5 1,617,320 + Dsui_1554 0.22 +0.2 1,617,392 + Dsui_1554 0.25 +0.5 1,617,392 + Dsui_1554 0.25 -1.1 1,617,400 - Dsui_1554 0.25 -1.1 1,617,468 + +0.5 1,617,541 - Dsui_1554 0.30 +0.5 1,617,547 + Dsui_1554 0.30 -2.1 1,617,614 + +0.5 1,617,640 + Dsui_1554 0.33 +0.5 1,617,661 + Dsui_1554 0.34 -1.1 1,617,887 - +0.5 1,617,933 - Dsui_1554 0.44 -1.8 1,617,993 + +0.5 1,617,993 + Dsui_1554 0.46 -0.5 1,618,143 - Dsui_1554 0.51 -0.5 1,618,278 - Dsui_1554 0.56 -1.1 1,618,357 - Dsui_1554 0.59 -1.7 1,618,387 - Dsui_1554 0.60 -1.8 1,618,394 + Dsui_1554 0.60 +0.5 1,618,402 - Dsui_1554 0.60 +0.5 1,618,468 + Dsui_1554 0.63 +0.5 1,618,501 - Dsui_1554 0.64 -1.1 1,618,609 - +0.5 1,618,611 + Dsui_1554 0.68 +0.5 1,618,664 + +0.5 1,618,853 - +0.5 1,618,984 - Dsui_1554 0.81 -0.5 1,619,078 - +0.5 1,619,106 - Dsui_1554 0.85 +0.5 1,619,145 - Dsui_1554 0.87 -1.8 1,619,237 + +0.5 1,619,248 + -0.5 1,619,330 - +0.5 1,619,789 - -0.6 1,619,852 - -0.5 1,620,057 + Dsui_1555 0.11 +0.5 1,620,065 - Dsui_1555 0.11 -0.5 1,620,072 + Dsui_1555 0.12 +0.5 1,620,090 + Dsui_1555 0.12 -1.1 1,620,182 + Dsui_1555 0.15 -1.5 1,620,182 + Dsui_1555 0.15 -0.5
Or see this region's nucleotide sequence