Experiment: ALP with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1392 and Dsui_1393 are separated by 9 nucleotides Dsui_1393 and Dsui_1394 overlap by 4 nucleotides
Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844
_1392
Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560
_1393
Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534
_1394
Position (kb)
1450
1451
1452
1453 Strain fitness (log2 ratio)
-2
-1
0
1 at 1449.906 kb on + strand, within Dsui_1392 at 1449.975 kb on - strand at 1450.036 kb on - strand, within Dsui_1392 at 1450.236 kb on + strand, within Dsui_1392 at 1450.244 kb on - strand, within Dsui_1392 at 1450.292 kb on + strand, within Dsui_1392 at 1450.328 kb on - strand, within Dsui_1392 at 1450.457 kb on + strand, within Dsui_1392 at 1450.476 kb on - strand, within Dsui_1392 at 1450.479 kb on + strand, within Dsui_1392 at 1450.541 kb on + strand at 1450.545 kb on - strand at 1450.697 kb on + strand at 1450.719 kb on + strand at 1450.720 kb on + strand, within Dsui_1392 at 1450.727 kb on - strand at 1450.853 kb on - strand at 1450.857 kb on + strand at 1450.872 kb on + strand at 1450.901 kb on + strand at 1450.909 kb on - strand at 1450.988 kb on - strand at 1451.348 kb on + strand at 1451.399 kb on - strand at 1451.639 kb on + strand at 1451.639 kb on + strand, within Dsui_1393 at 1451.639 kb on + strand at 1451.647 kb on - strand at 1451.656 kb on + strand at 1451.668 kb on + strand, within Dsui_1393 at 1451.668 kb on - strand, within Dsui_1393 at 1451.932 kb on + strand, within Dsui_1393 at 1452.105 kb on - strand at 1452.112 kb on - strand, within Dsui_1393 at 1452.278 kb on - strand at 1452.462 kb on - strand at 1452.661 kb on - strand, within Dsui_1394 at 1452.784 kb on - strand, within Dsui_1394 at 1452.797 kb on + strand, within Dsui_1394 at 1452.830 kb on - strand, within Dsui_1394 at 1452.892 kb on - strand, within Dsui_1394 at 1453.053 kb on - strand at 1453.103 kb on - strand, within Dsui_1394 at 1453.431 kb on - strand, within Dsui_1394 at 1453.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.002 mg/ml remove 1,449,906 + Dsui_1392 0.22 -1.2 1,449,975 - +0.4 1,450,036 - Dsui_1392 0.33 -1.6 1,450,236 + Dsui_1392 0.49 -0.6 1,450,244 - Dsui_1392 0.50 -1.6 1,450,292 + Dsui_1392 0.54 +1.4 1,450,328 - Dsui_1392 0.57 +0.4 1,450,457 + Dsui_1392 0.68 +0.4 1,450,476 - Dsui_1392 0.69 -1.2 1,450,479 + Dsui_1392 0.69 -0.6 1,450,541 + +0.4 1,450,545 - +0.4 1,450,697 + +0.4 1,450,719 + +0.4 1,450,720 + Dsui_1392 0.90 +0.4 1,450,727 - -1.2 1,450,853 - +0.4 1,450,857 + -0.6 1,450,872 + -0.6 1,450,901 + -0.6 1,450,909 - -1.2 1,450,988 - +0.4 1,451,348 + +0.4 1,451,399 - +0.4 1,451,639 + +0.4 1,451,639 + Dsui_1393 0.46 -1.2 1,451,639 + +0.4 1,451,647 - +0.4 1,451,656 + -0.6 1,451,668 + Dsui_1393 0.48 -0.6 1,451,668 - Dsui_1393 0.48 -0.6 1,451,932 + Dsui_1393 0.63 -0.6 1,452,105 - +0.4 1,452,112 - Dsui_1393 0.74 -1.6 1,452,278 - +0.4 1,452,462 - +0.4 1,452,661 - Dsui_1394 0.11 +0.4 1,452,784 - Dsui_1394 0.23 -2.4 1,452,797 + Dsui_1394 0.25 -1.2 1,452,830 - Dsui_1394 0.28 -0.6 1,452,892 - Dsui_1394 0.34 -2.1 1,453,053 - +0.4 1,453,103 - Dsui_1394 0.56 -0.6 1,453,431 - Dsui_1394 0.89 -0.0 1,453,468 - -0.6
Or see this region's nucleotide sequence